Reply To: Define custom potential?

[Anonymous]

Sure, use constraints. That’s pretty much all constraints are, is user-defined modifications to the score term. In your case you could use AtomPairConstraints between your two residues. Here’s documentation on some of the available constraints and their use in C++ Rosetta; I don’t know much about it in pyrosetta.

http://www.rosettacommons.org/manuals/archive/rosetta3.2.1_user_guide/constraint_file.html