Reply To: Problem with HETATM entries in PDB file

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May 20, 2011 at 6:23 pm #5619
Anonymous

    “It seems to me that for RNA, one has to do mass modifications in the PDB file to make them compatible according to Rosetta.”

    Pretty much, yes. I can help you troubleshoot, but as a general rule you’ll need to make your PDB names match those in the same files (in the demo, or whatever) plus the database parameter files (rosetta_database/chemical/residue_type_sets/rna/residue_types).