Reply To: flexpep docking problem—–How to do with phosphorylation peptide?

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June 2, 2011 at 9:05 pm #5695
Anonymous

    Thanks for Smlewis’ kind reply.
    In my peptide, the p-ser is labeled “SEP” and this is not recognized by Rosetta.Where should I tell the program that “SEP” is the phosphorylated Serine?(The atom names matches well with the file you mentioned)
    I changed the definition filename of p-ser into SEP.txt,but it does not work..
    When I change the “SEP”s into “SER”, it now works fine,as it was discussed before
    http://www.rosettacommons.org/node/2310
    Thanks again.