Reply To: Native gives higher (positive) than lowest energy and clustered decoys

Member Site › Forums › Rosetta 3 › Rosetta 3 – General › Native gives higher (positive) than lowest energy and clustered decoys › Reply To: Native gives higher (positive) than lowest energy and clustered decoys

June 3, 2011 at 6:56 pm #5716
Anonymous

    According to the documentation (http://www.rosettacommons.org/manuals/archive/rosetta3.2.1_user_guide/app_relax_command.html), the default for relax is score12 (that should be the default for most applications dealing with just proteins). If you’re concerned, for most applications you can explicitly specify score12 weights with a “-score:weights score12_full” command line option.