Reply To: Why I have the different result with the same initial condition?

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June 7, 2011 at 1:08 am #5724
Anonymous

    1000 decoys is far too few for a global search of one partner. 10^4 – 10^6 is more reasonable, depending on the proteins sizes. Please see the 2003 JMB paper and the CAPRI papers for a variety of examples.