Reply To: protein structure prediction using relax — high-powered jobs

[Anonymous]

Looking at the code around the error, I think your problem may be in your alignment file. No template PDB at all should spit a critical error (crash) “ThreadingJobInputter needs parent-pdbs either as in:file:template_pdb or as in:file:template_silent “. This error occurs at the end of a search for the appropriate alignment – I guess from that .ali file….? (In case you can’t tell I’ve never used the threading inputter…)

By the way, the -overwrite suggestion is a red herring; normally if no jobs are completed it’s because someone re-ran a job where the results already existed. so overwrite is suggested. Here, no jobs are created (because of the failure in figuring out alignments with which to create them); no jobs created = no jobs run = overwrite hint.