Member Site Forums Rosetta 3 Rosetta 3 – General Using D-amino acids in Rosetta docking Reply To: Using D-amino acids in Rosetta docking


    The calculation crashed as well as after dpro and after darg. Without Dpro or renamed into Pro the docking protocol seems to go a step forward, with the following additional lines in the Logfile, but finally it’s crashing too.

    Reading in rot lib /Users/moehle/Documents/Rosetta3.2.1/rosetta_database//ncaa_rotlibs/darg.rotlib…done!
    Assertion failed: (static_cast< size_type >( i – l_ ) < super::size()), function operator[], file src/utility/vectorL.hh, line 330.
    protocols.docking.DockingHighRes: ::::::::::::::::::DOCK_MCM:::::::::::::::::::
    core.pack.task: Packer task: initialize from command line()
    core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
    core.pack.pack_rotamers: built 109 rotamers at 13 positions.