Reply To: rosetta protein protein docking start up

[Anonymous]

After you build the applications by issuing ./scons.py -jN mode=release bin from the rosetta directory, you should find all of the executables in the rosetta/bin directory. The executables generally have descriptive names. To run docking, execute the “docking_protocol.[OS_TYPE][COMPILER][MODE]” (e.g. docking_protocol.linuxgccrelease) executable. The documentation pages should provide you with commonly used flags to give you additional guidance you need. The documentation for docking can be found here: http://www.rosettacommons.org/manuals/archive/rosetta3.2.1_user_guide/app_docking.html