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    Dear Wieztner, Thanks a lot.

    I want to dock model_2.pdb on compx.pdb (fixed),

    I did run the following commands,

    ~/Downloads/ros1/rosetta_source/bin/docking_protocol.linuxgccrelease -database /home/Downloads/ros1/rosetta_database -s ../../pdb/model_2.pdb compx.pdb

    Got the following error message ?

    protocols.jd2.PDBJobInputter: filling pose from PDB ../../pdb/model_2.pdb
    protocols.docking.DockingProtocol: Setting docking foldtree
    protocols.docking.DockingProtocol: old fold tree: FOLD_TREE EDGE 1 98 -1

    ERROR: cutpoint
    ERROR:: Exit from: src/protocols/docking/ line: 91
    > ~/Downloads/ros1/rosetta_source/bin/docking_protocol.linuxgccrelease -database /home/Downloads/ros1/rosetta_database -s ../../pdb/model_2.pdb compx.pdb

    any help? Thanks.