Reply To: secondary structure prediction for generation of fragment libraries

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June 27, 2011 at 2:25 pm #5817
Anonymous

    ‘Which “psipred” is more reliable? ‘

    This is really a question for the developers of psipred more than us. I would hazard a guess that the most recent version is “best”.

    I think the secondary structure libraries matter quite a bit to the final result. I’m not aware of anyone benchmarking slightly-different fragment inputs for folding a known structure to see which one comes out best.