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    When I use the method pose.conformation().set_xyz(AtomID(),xyzVector) on 10,000 atoms, it takes about 60seconds. There are a few other method calls besides setting the internal and xyz coordinates. So, I am trying to use .batch_set_xyz() and that requires two vector1’s.

    Since that isn’t working right now, I will try and set the external and internal coords manually. Hopefuly that doesn’t break anything.