Reply To: computer shuts down during autobulding with rosetta

Member Site › Forums › Rosetta 3 › Rosetta 3 – General › computer shuts down during autobulding with rosetta › Reply To: computer shuts down during autobulding with rosetta

July 21, 2011 at 4:21 pm #5888
Anonymous

    Splitting work into 20 jobs and running with 100 processors using sh

    I’m not familiar with the MR protocol, but this line concerns me. Is this on a single box or a cluster? If it’s a single 8-core, shared memory machine, trying to launch 100 copies of Rosetta or Phenix is very likely to hang/kill your box as they all compete for the same 8 cores and the same memory.

    Try changing the “nproc = 100” line to something more reasonable for your system and see if that helps.