Reply To: Debian Med: Sharing Rosetta build experience with Debian and Ubuntu

[Anonymous]

A new version is out, the one or other may profit from the following instructions for a compilation on recent Debian or Ubuntu machines.

Getting the source to a good place

Download tarball from your web browser

Render it detectable to Debian build system

ln -s rosetta3.3_source.tgz rosetta_3.3.orig.tar.gz

Unpack it

tar xzvf rosetta_3.3.orig.tar.gz

Be impressed by the size of the source code

du -sh rosetta_source

374M rosetta_source

Substract contribution external software from that impression

du -sh rosetta_source/external

make sure you have at least 4.5 GB of free disk space on that partition

df -h .

Adding Build instructions to the source code from Debian Med‘s subversion repository

change to source tree

cd rosetta_source

get debian directory

svn checkout svn://svn.debian.org/svn/debian-med/trunk/packages/rosetta/trunk/debian

quickly check that the debian directory is talking about the same version and is not somewhat ‘behind’

dpkg-parsechangelog

Source: rosetta

Version: 3.3-1

…

Handling patches to the source code to adapt from Rosetta’s source tree for Debian/Ubuntu

make sure all build dependencies are available

sudo apt-get install debhelper scons zlib1g-dev quilt build-essential

prepare patch-tool quilt to find the patches in the Debian subfolder

QUILT_PATCHES=debian/patches; export QUILT_PATCHES

check if all patches apply

quilt push -a

The very new releases won’t have any such patches. Complain here or by email to the package maintainer if something fails.

Reserve an hour for the build on a recent machine.

initiate build

fakeroot ./debian/rules -j 4 binary

the Debian package is not too big

ls -lh ../rosetta_3.3-1_amd64.deb

-rw-r–r– 1 moeller moeller 30M Aug 1 16:35 ../rosetta_3.3-1_amd64.deb

install the package

dpkg -i ../rosetta_3.3-1_amd64.deb

quick cross-check that the libraries are indeed found

ldd /usr/bin/FlexPepDocking

linux-vdso.so.1 => (0x00007fff24db8000)

libprotocols.so => /usr/lib/rosetta/lib/libprotocols.so (0x00007ffd5fd31000)

libcore.5.so => /usr/lib/rosetta/lib/libcore.5.so (0x00007ffd5f8a0000)

libcore.4.so => /usr/lib/rosetta/lib/libcore.4.so (0x00007ffd5ef22000)

libcore.3.so => /usr/lib/rosetta/lib/libcore.3.so (0x00007ffd5d7f6000)

libcore.2.so => /usr/lib/rosetta/lib/libcore.2.so (0x00007ffd5d118000)

libcore.1.so => /usr/lib/rosetta/lib/libcore.1.so (0x00007ffd5cedf000)

libbasic.so => /usr/lib/rosetta/lib/libbasic.so (0x00007ffd5c969000)

libnumeric.so => /usr/lib/rosetta/lib/libnumeric.so (0x00007ffd5c681000)

libutility.so => /usr/lib/rosetta/lib/libutility.so (0x00007ffd5c30e000)

libObjexxFCL.so => /usr/lib/rosetta/lib/libObjexxFCL.so (0x00007ffd5c0c1000)

libz.so.1 => /lib/libz.so.1 (0x00007ffd5be8c000)

libcppdb.so => /usr/lib/rosetta/lib/libcppdb.so (0x00007ffd5bc32000)

libsqlite3.so => /usr/lib/rosetta/lib/libsqlite3.so (0x00007ffd5b996000)

libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007ffd5b68c000)

libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007ffd5b409000)

libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007ffd5b1f3000)

libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007ffd5ae6f000)

/lib64/ld-linux-x86-64.so.2 (0x00007ffd6328d000)