blast database error

[Anonymous]

 

$ROSETTA_BIN/antibody.linuxclangrelease -fasta IGHab.fasta | tee grafting.log

 

I got following error:

 

[ERROR] EXCN_utility_exit has been thrown from: src/basic/execute.cc line: 55

ERROR: basic.execute encounter error while runnning blastp -db /short/wm35/rosetta/tools/antibody/blast_database/database.H2.20 -query grafting/h2.fasta -out grafting/h2.align -word_size 2 -outfmt 7 -max_target_seqs 1024 -evalue 2000 -matrix PAM30

BLAST Database error: No alias or index file found for protein database [/short/wm35/rosetta/tools/antibody/blast_database/database.H2.20] in search path [/short/wm35/ROS::]

 

Exiting…

 

any idea? Thanks a lot

[Anonymous]

BLAST Database error: No alias or index file found for protein database [/short/wm35/rosetta/tools/antibody/blast_database/database.H2.20] in search path [/short/wm35/ROS::]

blast needs a file from the tools repository and can’t find it.  When you downloaded Rosetta, did you get the tools repo with it (it’s in the bundle version)?  Is it at the location specified?

[Author]

Posts