Can’t find the source code of FlexPepDock protocol in Rosetta3.1

[Anonymous]

Hi all,

I’ve read a paper “Sub-angstrom modeling of complexes between flexible peptides and globular proteins” which was written by Barak Raveh.et al. in 2010. They presented the Rosetta FlexPepDock protocol to model the complex between peptide and protein. They said that this protocol was implemented within revision 31671 of the Rosetta repository. But I can’t find the source code of the protocol in the latest Rosetta version 3.1. Does somebody know where it is? How can I get the source code ?

SunH

[Anonymous]

According to the SVN logs, release 3.1 is equivalent to SVN version 32531 (which is greater than 31671). Unfortunately, FlexPepDock was in the development area at that time, (the devel folder), which is not released. So, I don’t think FlexPepDock has actually been released. It will come out with 3.2 I guess. I’ve sent an email to Barak to see if he has a solution.

[Anonymous]

Dear SunH,
As Steven mentioned, FlexPepDock will be publicly released only in version 3.2 (I have already done all the necessary procedures, but the release will take a bit more time for reasons that are not up to us. Would you like to contact me in person and I can see what I can do in the mean time?

Please mail barak.raveh@mail.huji.ac.il.

Best,
Barak

> Hi all,
>
> I’ve read a paper “Sub-angstrom modeling of complexes between flexible peptides and globular proteins” which was written by Barak Raveh.et al. in 2010. They presented the Rosetta FlexPepDock protocol to model the complex between peptide and protein. They said that this protocol was implemented within revision 31671 of the Rosetta repository. But I can’t find the source code of the protocol in the latest Rosetta version 3.1. Does somebody know where it is? How can I get the source code ?
>
> SunH

[Author]

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