conda installation

[Anonymous]

Dear friends,

I am new to rosetta and need some help. Basically, I have two questions:

1) My main interest is to use rosettafold to predict structures. Do I need to install pyrosetta for this purpose?

2) I was trying to install pyrosetta through conda. According to the instruction, I need to put “USERNAME:PASSWORD@conda.graylab.jhu.edu” in the .condarc file. Where should I obtain the usr/psw? I registered for rosetta and received an email containing a usr/psw with usr is “Academic_User”. I can use them to download rosetta from http://www.rosettacommons.org. However, when I put them in the .condarc file and tried, I got the following error from conda: 

“The credentials you have provided for this URL are invalid”

Thank you very much.

Michael

[Anonymous]

Hello Michael.

1) yes.

2) you can request an academic license specific for pyrosetta via the ‘comotion’ site:

https://els2.comotion.uw.edu/product/pyrosetta

Let me know if you encounter any further issues!

[Anonymous]

Thank you very much for your help! With your help I realized the license I requested is for rosetta not pyrosetta!

Can you brief me what is the difference between rosetta, pyrosetta, and rosettafold? 

Thank you very much.

Michael

 

[Anonymous]

From: https://www.pyrosetta.org/faq#h.oi4s609oasmz

PyRosetta is a Python-script based front-end to the Rosetta molecular modeling suite. Rosetta, which is a collaborative project between more than 15 labs world-wide, requires users to have substantial experience in C++ and Rosetta software development to write custom algorithms. Through the use of Python-bindings to Rosetta C++ source code, PyRosetta allows the end-user to have access to the same Rosetta functions available to Rosetta developers, through an easy-to-use Python script based interface.

 

RoseTTAFold is the Baker-Lab attempt to reproduce the results of DeepMind’s AlphaFold pipeline using Rosetta tools, introducing deep neural networks.

[Author]

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