crashed when loading RDC data

[Anonymous]

Dear Developers

It appears that nearly all 2017 and 2018 Rosetta distributions have a crashed problem when reading the RDC data, please see below for running the demo data ($rosettaDir/demos/public/abinitio_w_chemicalshift_noe_rdc/):

core.init: Constant seed mode, seed=1111111 seed_offset=0 real_seed=1111111

core.init.random: RandomGenerator:init: Normal mode, seed=1111111 RG_type=mt19937

protocols.abinitio.AbrelaxApplication: read fasta sequence: 52 residues

GSPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKH

protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active … 

core.chemical.GlobalResidueTypeSet: Finished initializing centroid residue type set.  Created 62 residue types

core.chemical.GlobalResidueTypeSet: Total time to initialize 0.09 seconds.

core.io.fragments: reading fragments from file: rosetta_inputs/pick_cs_fragments/frags.score.200.9mers … 

core.io.fragments: rosetta++ fileformat detected! Calling legacy reader… 

core.fragments.ConstantLengthFragSet: finished reading top 25 9mer fragments from file rosetta_inputs/pick_cs_fragments/frags.score.200.9mers

core.io.fragments: reading fragments from file: rosetta_inputs/pick_cs_fragments/frags.score.200.3mers … 

core.io.fragments: rosetta++ fileformat detected! Calling legacy reader… 

core.fragments.ConstantLengthFragSet: finished reading top 200 3mer fragments from file rosetta_inputs/pick_cs_fragments/frags.score.200.3mers

core.scoring.constraints.util: Constraint choice: rosetta_inputs/NOE.centroid.cst

core.scoring.constraints.ConstraintsIO: read constraints from rosetta_inputs/NOE.centroid.cst

core.scoring.constraints.ConstraintsIO: Read in 20 constraints

core.fragment: compute strand/loop fractions for 52 residues… 

protocols.abinitio.AbrelaxApplication: run FoldConstraints…..

basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt

basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt

basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt

basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt

basic.io.database: Database file opened: scoring/score_functions/SecondaryStructurePotential/phi.theta.36.HS.resmooth

basic.io.database: Database file opened: scoring/score_functions/SecondaryStructurePotential/phi.theta.36.SS.resmooth

core.scoring: ATOM_VDW set to CENTROID_ROT_MIN

basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBPoly1D.csv

basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBFadeIntervals.csv

basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBEval.csv

basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/DonStrength.csv

basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/AccStrength.csv

core.scoring.ramachandran: shapovalov_lib::shap_rama_smooth_level of 4( aka highest_smooth ) got activated.

basic.io.database: Database file opened: scoring/score_functions/rama/shapovalov/kappa25/all.ramaProb

basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.all.txt

basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.gly.txt

basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.pro.txt

basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.valile.txt

basic.io.database: Database file opened: scoring/score_functions/centroid_smooth/cen_rot_pair_params.txt

basic.io.database: Database file opened: scoring/score_functions/centroid_smooth/cen_rot_env_params.txt

basic.io.database: Database file opened: scoring/score_functions/centroid_smooth/cen_rot_cbeta_params.txt

basic.io.database: Database file opened: scoring/score_functions/centroid_smooth/cen_rot_pair_ang_params.txt

core.scoring.AtomVDW: Openning alternative vdw file: /usr/local/apps/rosetta/2018.21//main/database/chemical/atom_type_sets/centroid_rot//min.txt

core.scoring: ATOM_VDW set to CENTROID_ROT_MIN

core.scoring.ResidualDipolarCoupling: Reading RDC file rosetta_inputs/nh.rdc

*** Error in `/usr/local/apps/rosetta/2018.21//bin/minirosetta’: free(): invalid next size (fast): 0x0000000002fe5680 ***

======= Backtrace: =========

/lib64/libc.so.6(+0x81429)[0x2b5801417429]

 

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