duplex RNA

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    • August 5, 2021 at 1:34 pm #3823
      Anonymous

        Hello,

        I am using FARFAR to get the possible structures for a A-bulge RNA duplex with the following specifications:

        Input sequence: CCGGCAGUGUG+CACACGUCGG

        Input secstruct (((((.(((((+))))))))))

        I need to keep the structure in the duplex form and not the hairpin. All output files I got with the mentioned specifications are RNA hairpins. Is there a way I can keep the structure in the duplex form.

         

        thanks for yoyr help.

        Best,

        Amir

         

         

      • August 16, 2021 at 5:43 pm #15990
        Anonymous

          When using sequence/secstruct input, you should separate distinct strands with a comma; otherwise it will try to create a single-chain RNA.

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