Error from clean_pdb.py

[Anonymous]

Dear Rosetta Users,

I’m recently studying the Comparative Modeling tutorial: https://www.rosettacommons.org/demos/latest/tutorials/rosetta_cm/rosetta_cm_tutorial

When I ran the script: clean_pdb.py, there was an error: /dors/meilerlab/apps/Linux2/x86_64/bin/python2.5: bad interpreter: No such file or directory.

What can I do to fix this? The python on my computer is python 3. Thank you in advance!

[Anonymous]

Don’t use the clean_pdb.py script in the tutorials/demos directory. Use the one at tools/protein_tools/scripts/clean_pdb.py — That said, I’m not sure if it’s been updated to work with Python3. You may need to use Python2 instead, or make the necessary (hopefully small) changes to the file to make it compatible.

[Anonymous]

Thank you for the suggestion! 

[Author]

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