Error in installing Rosetta on Centos6.8

This topic has 6 replies, 2 voices, and was last updated 7 years, 10 months ago by Anonymous.

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- February 8, 2017 at 5:25 am #2582
  Anonymous
  Hi,
  
  I am trying to install Rosetta Bundle 3.7 on centos 6.8 which gcc version 4.4.7 using the command: ./scons.py mode=release bin extras=static.
  
  I am getting the following error in the end during the installation:
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/antibody.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/PeptideDeriver.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/AbinitioRelax.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/AnchoredDesign.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/AnchorFinder.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/BuildPeptide.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/AnchoredPDBCreator.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/CstfileToTheozymePDB.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/DARC.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/FiberDiffractionFreeSet.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/FlexPepDocking.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/FloppyTail.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/InterfaceAnalyzer.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/MakeRotLib.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/SymDock.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/UBQ_Gp_CYD-CYD.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/UBQ_E2_thioester.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/UnfoldedStateEnergyCalculator.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/UBQ_Gp_LYX-Cterm.static.linuxgccrelease] Error 1
  
  /usr/bin/ld: cannot find -lz
  
  collect2: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/2.6/64/x86/gcc/4.4/static/antibody_CR_paratope.static.linuxgccrelease] Error 1
  
  scons: building terminated because of errors.
  
  Could anyone please tell me how can I solve this problem?
  
  Thanks
  
  BH
- February 9, 2017 at 12:50 am #12129
  Anonymous
  https://www.rosettacommons.org/content/ld-cannot-find-lz
  
  ubuntu needs “sudo apt-get install zlib1g-dev”; I don’t know what it is for centos but it’s close to that.
- February 9, 2017 at 12:50 am #12650
  Anonymous
  https://www.rosettacommons.org/content/ld-cannot-find-lz
  
  ubuntu needs “sudo apt-get install zlib1g-dev”; I don’t know what it is for centos but it’s close to that.
- February 9, 2017 at 12:50 am #13171
  Anonymous
  https://www.rosettacommons.org/content/ld-cannot-find-lz
  
  ubuntu needs “sudo apt-get install zlib1g-dev”; I don’t know what it is for centos but it’s close to that.
- February 10, 2017 at 11:03 am #12131
  Anonymous
  It’s working now.. Thanks Lewis.
- February 10, 2017 at 11:03 am #12652
  Anonymous
  It’s working now.. Thanks Lewis.
- February 10, 2017 at 11:03 am #13173
  Anonymous
  It’s working now.. Thanks Lewis.
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