Error of non standard amino acid (SnugDock)

[Anonymous]

Hi

I am trying to do a docking with an antibody molecule and its partner protein. As far as I can see, the amino acid residues are perfectly fine. Yet when I try submitting it, I am getting an error about non-standard AA. Please find attached the screenshot of the error message.

Kindly help me get through this problem.

Thanks

Suchetana

 

I am also attaching the input file (though this is not the complete file. I am unable to upload the complete file for size issues. Please suggest a workaround)

[Anonymous]

It’s not an issue with the portions of the file you extracted. The cut-down file submits to ROSIE SnugDock without a problem: http://rosie.rosettacommons.org/snug_dock/viewjob/30251

Could you host the full PDB file somewhere else (e.g. like Google Drive or DropBox), and then post a link to that here? That should get around the forum file size restriction.

[Anonymous]

It’s not an issue with the portions of the file you extracted. The cut-down file submits to ROSIE SnugDock without a problem: http://rosie.rosettacommons.org/snug_dock/viewjob/30251

Could you host the full PDB file somewhere else (e.g. like Google Drive or DropBox), and then post a link to that here? That should get around the forum file size restriction.

[Anonymous]

It’s not an issue with the portions of the file you extracted. The cut-down file submits to ROSIE SnugDock without a problem: http://rosie.rosettacommons.org/snug_dock/viewjob/30251

Could you host the full PDB file somewhere else (e.g. like Google Drive or DropBox), and then post a link to that here? That should get around the forum file size restriction.

[Author]

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