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Hi Rmoretti,
Okay, I deleted my Rosetta folder and started from scratch, while making notes of exactly what I did. I get the same error message! I did not move the Rosetta directory or change any of the defaults. I did not type any commands other that what you see in my notes below.
I think there must be a typo somewhere in the instructions on the website (https://www.rosettacommons.org/docs/latest/development_documentation/test/run-unit-test), because I followed them exactly (twice now!) and it doesn’t work.
Here’s the steps:
First, I followed the instructions on https://www.rosettacommons.org/demos/latest/tutorials/install_build/install_build
1) Obtained a Rosetta academic license from https://els.comotion.uw.edu/licenses/86
2) Downloaded Rosetta latest weekly release source (2017.39, 2.8 GB) from https://www.rosettacommons.org/software/academic
3) Extracted the tgz file to the Desktop, selecting the option to keep the directory structure
4) Renamed the extracted folder as “Rosetta”
5) In Terminal, typed “cd ./Desktop/Rosetta/main/source”
***Note that the website says “If you downloaded the source bundle, you can see that the bin/ directory is currently empty.” However, actually the bin/ directory does not exist in the source folder.***
6) In Terminal, typed “./scons.py -j 2 mode=release bin” and waited over 2 hours to complete, got the message “scons: done building targets.”
The first bullet point of this website says that unit tests are “are occasionally used to verify Rosetta is installed correctly.” https://www.rosettacommons.org/docs/latest/development_documentation/test/rosetta-tests
Second, I followed the instructions on https://www.rosettacommons.org/docs/latest/development_documentation/test/run-unit-test
7) Restarted Terminal, then typed “cd ./Desktop/Rosetta/main/source”
In Terminal, typed “./scons.py -j 2 mode=debug” and waited about 2 hours to complete, got the message “scons: done building targets.”***Note that the website says “scons.py -j #numproc mode=debug” but it should say “./scons.py -j #numproc mode=debug” (following the same formatting as on the previous website, https://www.rosettacommons.org/demos/latest/tutorials/install_build/install_build) and in order to avoid the error “scons.py: command not found”
***Note that there’s also a typo on this website, “succeeed”
9) Restarted Terminal, then typed “cd ./Desktop/Rosetta/main/source”
10) In Terminal, typed “./scons.py -j 2 mode=debug cat=test” and waited less than 2 hours to complete, got the message “scons: done building targets.”
***Note that the website says “scons.py -j #numproc mode=debug cat=test” but it should say “./scons.py -j #numproc mode=debug cat=test” (following the same formatting as on the previous website, https://www.rosettacommons.org/demos/latest/tutorials/install_build/install_build) and in order to avoid the error “scons.py: command not found”
11) Restarted Terminal, then typed “cd ./Desktop/Rosetta/main/source”
12) In Terminal, typed “python test/run.py” and got the message:
Identifying platform…
Platform found: release/linux/4.10/64/x86/gcc/6.3/default
Error running unit test executable for protocols.test – not all tests may be availible.
Error running unit test executable for core.test – not all tests may be availible.
Error running unit test executable for basic.test – not all tests may be availible.
Error running unit test executable for ObjexxFCL.test – not all tests may be availible.
Error running unit test executable for numeric.test – not all tests may be availible.
Error running unit test executable for utility.test – not all tests may be availible.
Error running unit test executable for apps.test – not all tests may be availible.
Error running unit test executable for devel.test – not all tests may be availible.
Traceback (most recent call last):
File “test/run.py”, line 667, in <module>
if __name__ == “__main__”: main(sys.argv)
File “test/run.py”, line 661, in main
T.runUnitTests()
File “test/run.py”, line 380, in runUnitTests
with open(log_file, ‘w’) as log_file_h:
IOError: [Errno 2] No such file or directory: u’build/test/release/linux/4.10/64/x86/gcc/6.3/default/protocols.test.log’
13) In Terminal, typed “python test/run.py –mode=debug” and got the message:
Identifying platform…
Platform found: debug/linux/4.10/64/x86/gcc/6.3/default
Error running unit test executable for protocols.test – not all tests may be availible.
Error running unit test executable for core.test – not all tests may be availible.
Error running unit test executable for basic.test – not all tests may be availible.
Error running unit test executable for numeric.test – not all tests may be availible.
Error running unit test executable for utility.test – not all tests may be availible.
Error running unit test executable for apps.test – not all tests may be availible.
Unit test summary
Total number of tests: 0
number tests passed: 0
number tests failed: 0
Success rate: 0%
End of Unit test summaryDone!
14) Restarted Terminal, then typed “cd ./Desktop/Rosetta/main/source/build/test/debug/linux/4.10/64/x86/gcc/6.3/default”
15) In Terminal, typed “./core.test ScoreFunctionTest –database /Desktop/Rosetta/main” and got the message “./core.test: error while loading shared libraries: libsqlite3.so: cannot open shared object file: No such file or directory”
So, what’s going on??? Thanks so much for your help!!! I know this is getting a bit involved, but any advice you might have is much appreciated.
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