Hello,
I have tried to install Rosetta (version 3.11) for use in Phenix (version 1.19.2) on ubuntu 18.04. No problem with Phenix installation and rosetta.build_phenix_interface nproc=24, but when I run rosetta.run_tests, I got the following.
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Generating 2 models on 1 processors…
DEBUG dumping error message
ERROR: Rosetta exited with status 139
stderr output:
AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS.
Segmentation fault (core dumped)
Traceback (most recent call last):
File “/usr/local/bin/phenix-1.19.2-4158/build/../modules/phenix/phenix/command_line/rosetta_refine.py”, line 315, in <module>
run(sys.argv[1:], create_dir=True)
File “/usr/local/bin/phenix-1.19.2-4158/build/../modules/phenix/phenix/command_line/rosetta_refine.py”, line 199, in run
debug=params.output.debug)
File “/usr/local/bin/phenix-1.19.2-4158/modules/phenix/phenix/rosetta/refine.py”, line 330, in __init__
self.run_jobs()
File “/usr/local/bin/phenix-1.19.2-4158/modules/phenix/phenix/rosetta/refine.py”, line 404, in run_jobs
check_result(result)
File “/usr/local/bin/phenix-1.19.2-4158/modules/phenix/phenix/rosetta/refine.py”, line 395, in check_result
raise RuntimeError(“Aborted due to error in job %d.” % result.job_id)
RuntimeError: Aborted due to error in job 1.
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I checked with log files with not much info and tried with Rosetta version 3.12 but the same error. How can I solve this problme? Many thanks.
Kyung hyun
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