Error when trying to import ‘get_secstruct’

[Anonymous]

Hello everyone,

I just installed and started playing around with PyRosetta, following the corresponding workshops in the web page, when I got the following error:

In [3]: from pyrosetta.toolbox import get_secstruct

---

ImportError                               Traceback (most recent call last)

<ipython-input-3-cbfef6ceb324> in <module>()

—-> 1 from pyrosetta.toolbox import get_secstruct

ImportError: cannot import name get_secstruct

It looks like ‘get_secstruct’ is not contained in ‘pyrosetta.toolbox’ module.

Does anyone encountered this before? Could it be just due to a change in the latest PyRosetta version with respect to the version of the tutorial?

Many thanks in advance,

Dani.

[Anonymous]

I have the same problem as well

 

ImportError: cannot import name ‘get_secstruct’

 

 

In [22]: from pyrosetta.toolbox import get_secstruct

---

ImportError                               Traceback (most recent call last)

<ipython-input-22-0b79146a0f8b> in <module>()

—-> 1 from pyrosetta.toolbox import get_secstruct

ImportError: cannot import name ‘get_secstruct’

In [23]:

 

 

 

[Anonymous]

The tutorial is out of date, unfortunately.  I don’t know who removed the secstruct function or why, but you can access it through a mover:

 

DSSP = pyrosetta.rosetta.protocols.moves.DsspMover()

DSSP.apply(pose)    # populates the pose's Pose.secstruct

ss = pose.secstruct()

[Anonymous]

is there a more recent tutorial available?  thank you so much, Amy

[Anonymous]

Thanks a lot!

quantum.

[Author]

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