error with extend_terminus.py

[Anonymous]

Hi all

I try to run the script extend_terminus.py with the following command :

python extend_terminus.2.py -c A -o 1.c.pdb -a 1.clean.pdb AAGAAGAGAG

and i end up with the following error

pack_rotamers = rosetta.protocols.simple_moves.PackRotamersMover(sfxn, task)

AttributeError: ‘module’ object has no attribute ‘PackRotamersMover’

Does anyone know how to fix that ?

Cheers

JM

[Anonymous]

Hello JM,

I am new to pyrosetta, but it seems that the script that you are refering to is from a version of pyrosetta which has a module named ‘PackRotamersMover’ under ‘simple_moves’, which no longer seems to be the case – https://graylab.jhu.edu/PyRosetta.documentation/pyrosetta.rosetta.protocols.simple_moves.html

I looked around and found a ‘PackRotamersMover’ under ‘protocols.minimization_packing’ instead of ‘protocols.simple_moves’ – perhaps this is the method/module you are looking for?

You do not post or link to the ‘extend_terminus.py’ script – is it a publicly available script? More experienced users may be better able to help you if you give them more information about the script as well as the version of python, pyrosette etc.

Kind regards,

Martin

 

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