FARFAR2 structure prediction give a circular RNA

[Anonymous]

i have suplied Farafar2 with an RNA sequences of length 47. the server returns a complete circular structure. i dont have a template and am just giving the fasta file. when i give the dot-bracket structure along with the fasta file, it returns an error too.  

[Anonymous]

What is the error returned? How is the FASTA formatted? You need to make sure your dot-bracket secondary structure is the same length as the sequence.

Your fasta should look like:

>rna_name A:1-47

aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

for example, and your secondary structure should be 47 characters long.

[Author]

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