Generate full symmetric assembly from subsystem

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    • April 29, 2011 at 3:04 am #888
      Anonymous

        Hi,

        I was just wondering if it’s possible to generate the full symmetric assembly from a modeled subsystem in symmetrical docking using Rosetta 3?

        Thanks…

      • April 29, 2011 at 2:03 pm #5500
        Anonymous

          You can analyze the pdb with the make_symmdef_file.pl script. The script will generate a pdb with all subunits in the system (*_symm.pdb). If you allow subunits to be generated at sufficiently large distances from the expanding subunit you should be able to get the whole thing (look at the -r flag).

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