How many iterations of remodel is enough?

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- July 16, 2020 at 3:07 pm #3509
  Anonymous
  Hello. I am wondering how many iterations is enough for remodel? Its a de-novo C-terminal extension: loop + helix of about 30 residues.
  
  -in:file:s p_final.pdb
  
  -remodel:blueprint final.blp
  
  -remodel:num_trajectory ????
  
  -remodel:save_top 5
  
  -overwrite
  
  -remodel:checkpoint
  
  -out:file:scorefile final.sc
  
  -ex1
  
  -ex2
  
  -hb_srbb 1.0
  
  -remodel:use_pose_relax
  
  -ignore_zero_occupancy false
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