how to relax structure constraining CA in Rosetta3.2?

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    • February 15, 2011 at 2:15 pm #787
      Anonymous

        Hi

        I am wondering how to relax structure constraining CA in Rosetta3.2?

        I found that each protocol contains two executable command such as:

        relax.default.linuxgccrelease relax.linuxgccrelease

        is there any differences between these two?

        THX

      • February 16, 2011 at 1:19 am #5031
        Anonymous

          No, it’s leftovers in the build system. The two symlinks point to the same place; the files should be identical.

          I believe that the relax application is compatible with the generic constraint file flags mentioned in the constraints documentation in the manual.

        • February 16, 2011 at 4:39 pm #5039
          Anonymous

            You can try the flag -constrain_relax_to_start_coords.

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