Incomplete Error message

[Anonymous]

So, I have a code that is supposed to design an enzyme with constraints taken into account. I started it once, looping through a folder of pdb files (that one is still running, takes a while to design 375 pdb files), then just changed which folder and pdb files it would work with. Unfortunately, I then got an error message that cuts off before actually giving the error:

RuntimeError: 

File: /home/benchmark/benchmark/W.glass/rosetta.Glass/_commits_/main/source/src/core/pack/task/ResfileReader.cc:1638

[ ERROR ] UtilityExitException

ERROR: 

 

Most errors I have managed to debug based upon what the error message is, but this one is a mystery. Code that is trying to run when the error is thrown:

 gtask=TaskFactory.create_packer_task(pose)

 parse_resfile(pose,gtask,gresfn)

gresfn is just the file name for the resfile for that task, and it is in string format.

Any insight or help is greatly appreciated!

 

[Anonymous]

I’m not too sure what’s going on, but it looks like there’s some issue with your resfile. I’d double check the format of the resfile, and make sure it’s what Rosetta expects it to be. To debug, try simpler resfiles until you get something that works, then slowly work your way more complex from there.

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