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Have anyone used the docking protocol in parallel? If yes, can I have a copy of the script via mail at mansy.pandit@gmail.com.
Thanks & Regards, mansi
It should work in MPI out of the box. Compile it with extras=mpi on the command line.
This flavor of MPI requires that you manually create output directories ahead of time (one per processor). The Gray lab is fixing that for 3.2.