PDB Clustering

Member Site › Forums › Rosetta 3 › Rosetta 3 – Applications › PDB Clustering

Viewing 0 reply threads
  • Author
    Posts
    • April 5, 2021 at 5:40 pm #3740
      Anonymous

        Hello,

        I was working on homology modeling and built 1000 models with ligands. I’m planning to select 100 top scored models and do clustering on them.

        I tried cluster.linuxgccrelease, but the program didn’t recognize the ligand. I specified the option -exclude_res, but it didn’t work. 

        I also tried calibur.linuxgccrelease, but there are a lot of warnings instead of the output.

        I’m attaching the log files. Can you help me with these issues? Thank you in advance!

         

    • Author
      Posts
    Viewing 0 reply threads
    • You must be logged in to reply to this topic.