Good evening, I would like to ask for your help because I am trying to run the pepspec anchor dock protocol, so I am using the following options as flags, which come in the tutorial:
-database / home / soler / rosetta / main / database
-in: file: s ./KARS.pdb
-ex1 – increase the chi1 resolution of the rotamer library
-ex2 – increase the chi2 resolution of the rotamer library
-extrachi_cutoff 0 – increase rotamer sampling at exposed positions
-pepspec: ref_pdb_list KARS.pdb A 5
-pepspec: n_peptides 5
-pepspec: anchor_type PRO
-pepspec: no_prepack_prot false
For this, I am executing the protocol on the desktop, in it I have the input structure and the previous flags file.
Desktop $ /home/soler/rosetta/main/source/bin/pepspec_anchor_dock.default.linuxgccrelease @flags
When I run this in the terminal, it automatically gives me an internal error, this appears when I open rosetta_crash.log:
[FILE]: src / utility / options / OptionCollection.cc
[LINE]: 1430
[START_MESSAGE]
Option matching -database not found in indented @file context –
[END_MESSAGE]
[END_CRASH_REPORT]
Can you help me? Thanks in advance
.
Good evening, I would like to ask for your help because I am trying to run the pepspec anchor dock protocol, so I am using the following options as flags, which come in the tutorial:
-database / home / soler / rosetta / main / database
-in: file: s ./KARS.pdb
-ex1 – increase the chi1 resolution of the rotamer library
-ex2 – increase the chi2 resolution of the rotamer library
-extrachi_cutoff 0 – increase rotamer sampling at exposed positions
-pepspec: ref_pdb_list KARS.pdb A 5
-pepspec: n_peptides 5
-pepspec: anchor_type PRO
-pepspec: no_prepack_prot false
For this, I am executing the protocol on the desktop, in it I have the input structure and the previous flags file.
Desktop $ /home/soler/rosetta/main/source/bin/pepspec_anchor_dock.default.linuxgccrelease @flags
When I run this in the terminal, it automatically gives me an internal error, this appears when I open rosetta_crash.log:
[FILE]: src / utility / options / OptionCollection.cc
[LINE]: 1430
[START_MESSAGE]
Option matching -database not found in indented @file context –
[END_MESSAGE]
[END_CRASH_REPORT]
Can you help me? Thanks in advance