Member Site › Forums › Rosetta 3 › Rosetta 3 – Applications › relax.linuxgccrelease in multiple processors
- This topic has 5 replies, 3 voices, and was last updated 3 years, 11 months ago by
Anonymous.
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AuthorPosts
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January 14, 2021 at 10:07 pm #3664
Anonymous
Hi, sorry if my question is naive. But I would like to aks if it is possible to run the next command in multiple processors and not in just one?
relax.linuxgccrelease -s model1.pdb -nstruct 1000
regards
and thank you
-
January 14, 2021 at 11:10 pm #15678
Yes, you would run via MPI. https://www.rosettacommons.org/docs/latest/rosetta_basics/MPI
-
January 15, 2021 at 12:07 am #15679
There is another way if you don’t have mpi installed:
You can use gnu parallel
parallel ‘relax.linuxgccrelease -s model1.pdb -nstruct 1000 -prefix {}_’ ::: {1..1000}
-
January 15, 2021 at 1:30 am #15680
But you may then need to change the constant_seed – right?
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January 15, 2021 at 9:12 am #15681
Hi, thanks for your answer. I tried to run it and I got an error message:
sorry for disturbing so much. (
I input this comand:
parallel ‘./relax.linuxgccrelease -s model1.pdb -nstruct 10 -prefix {}_’ ::: {1..10}
( the nomal comand runs without issues. ./relax.linuxgccrelease -s /home/ubuntu/Rosetta/main/PDbs/luegfpleu.pdb -nstruct 2)
and the error:
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f944d45808a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f944d4574f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f944d38407b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f944d384e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f944d38790b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f944d38832b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f944ac483e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f944ac4c1ad]
./relax.linuxgccrelease(+0x12c8) [0x558ab6a6d2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f944cdc1cb2]
./relax.linuxgccrelease(+0x136e) [0x558ab6a6d36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f92f0d3308a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f92f0d324f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f92f0c5f07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f92f0c5fe2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f92f0c6290b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f92f0c6332b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f92ee5233e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f92ee5271ad]
./relax.linuxgccrelease(+0x12c8) [0x564e9f0252c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f92f069ccb2]
./relax.linuxgccrelease(+0x136e) [0x564e9f02536e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f5e9cbc408a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f5e9cbc34f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f5e9caf007b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f5e9caf0e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f5e9caf390b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f5e9caf432b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f5e9a3b43e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f5e9a3b81ad]
./relax.linuxgccrelease(+0x12c8) [0x5556b60662c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f5e9c52dcb2]
./relax.linuxgccrelease(+0x136e) [0x5556b606636e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7fa30678308a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7fa3067824f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7fa3066af07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7fa3066afe2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7fa3066b290b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7fa3066b332b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7fa303f733e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7fa303f771ad]
./relax.linuxgccrelease(+0x12c8) [0x55d95aec32c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7fa3060eccb2]
./relax.linuxgccrelease(+0x136e) [0x55d95aec336e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f32ec73908a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f32ec7384f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f32ec66507b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f32ec665e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f32ec66890b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f32ec66932b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f32e9f293e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f32e9f2d1ad]
./relax.linuxgccrelease(+0x12c8) [0x55d36c1d92c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f32ec0a2cb2]
./relax.linuxgccrelease(+0x136e) [0x55d36c1d936e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7fbfb870808a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7fbfb87074f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7fbfb863407b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7fbfb8634e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7fbfb863790b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7fbfb863832b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7fbfb5ef83e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7fbfb5efc1ad]
./relax.linuxgccrelease(+0x12c8) [0x55e4101bf2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7fbfb8071cb2]
./relax.linuxgccrelease(+0x136e) [0x55e4101bf36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f6965ef208a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f6965ef14f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f6965e1e07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f6965e1ee2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f6965e2190b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f6965e2232b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f69636e23e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f69636e61ad]
./relax.linuxgccrelease(+0x12c8) [0x5572ba71f2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f696585bcb2]
./relax.linuxgccrelease(+0x136e) [0x5572ba71f36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7fc6f462508a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7fc6f46244f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7fc6f455107b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7fc6f4551e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7fc6f455490b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7fc6f455532b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7fc6f1e153e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7fc6f1e191ad]
./relax.linuxgccrelease(+0x12c8) [0x564838ba02c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7fc6f3f8ecb2]
./relax.linuxgccrelease(+0x136e) [0x564838ba036e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7fc906ee208a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7fc906ee14f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7fc906e0e07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7fc906e0ee2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7fc906e1190b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7fc906e1232b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7fc9046d23e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7fc9046d61ad]
./relax.linuxgccrelease(+0x12c8) [0x55f2fbf362c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7fc90684bcb2]
./relax.linuxgccrelease(+0x136e) [0x55f2fbf3636e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f73f690608a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f73f69054f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f73f683207b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f73f6832e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f73f683590b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f73f683632b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f73f40f63e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f73f40fa1ad]
./relax.linuxgccrelease(+0x12c8) [0x55fb769f22c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f73f626fcb2]
./relax.linuxgccrelease(+0x136e) [0x55fb769f236e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7fd5978b008a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7fd5978af4f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7fd5977dc07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7fd5977dce2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7fd5977df90b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7fd5977e032b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7fd5950a03e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7fd5950a41ad]
./relax.linuxgccrelease(+0x12c8) [0x55ff0074a2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7fd597219cb2]
./relax.linuxgccrelease(+0x136e) [0x55ff0074a36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f8cc985008a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f8cc984f4f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f8cc977c07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f8cc977ce2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f8cc977f90b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f8cc978032b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f8cc70403e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f8cc70441ad]
./relax.linuxgccrelease(+0x12c8) [0x557ca3bb72c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f8cc91b9cb2]
./relax.linuxgccrelease(+0x136e) [0x557ca3bb736e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f62159ab08a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f62159aa4f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f62158d707b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f62158d7e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f62158da90b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f62158db32b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f621319b3e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f621319f1ad]
./relax.linuxgccrelease(+0x12c8) [0x555d5bddb2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f6215314cb2]
./relax.linuxgccrelease(+0x136e) [0x555d5bddb36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7fdb708dd08a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7fdb708dc4f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7fdb7080907b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7fdb70809e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7fdb7080c90b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7fdb7080d32b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7fdb6e0cd3e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7fdb6e0d11ad]
./relax.linuxgccrelease(+0x12c8) [0x55c896f9d2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7fdb70246cb2]
./relax.linuxgccrelease(+0x136e) [0x55c896f9d36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f132e2de08a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f132e2dd4f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f132e20a07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f132e20ae2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f132e20d90b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f132e20e32b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f132bace3e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f132bad21ad]
./relax.linuxgccrelease(+0x12c8) [0x5604fa81b2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f132dc47cb2]
./relax.linuxgccrelease(+0x136e) [0x5604fa81b36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f2f440c808a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f2f440c74f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f2f43ff407b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f2f43ff4e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f2f43ff790b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f2f43ff832b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f2f418b83e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f2f418bc1ad]
./relax.linuxgccrelease(+0x12c8) [0x556d881012c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f2f43a31cb2]
./relax.linuxgccrelease(+0x136e) [0x556d8810136e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f2b90ad308a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f2b90ad24f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f2b909ff07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f2b909ffe2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f2b90a0290b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f2b90a0332b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f2b8e2c33e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f2b8e2c71ad]
./relax.linuxgccrelease(+0x12c8) [0x55a26b3df2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f2b9043ccb2]
./relax.linuxgccrelease(+0x136e) [0x55a26b3df36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f936e14508a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f936e1444f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f936e07107b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f936e071e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f936e07490b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f936e07532b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f936b9353e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f936b9391ad]
./relax.linuxgccrelease(+0x12c8) [0x5625895572c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f936daaecb2]
./relax.linuxgccrelease(+0x136e) [0x56258955736e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7fd13fad208a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7fd13fad14f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7fd13f9fe07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7fd13f9fee2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7fd13fa0190b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7fd13fa0232b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7fd13d2c23e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7fd13d2c61ad]
./relax.linuxgccrelease(+0x12c8) [0x55eebdbaa2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7fd13f43bcb2]
./relax.linuxgccrelease(+0x136e) [0x55eebdbaa36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f824700608a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f82470054f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f8246f3207b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f8246f32e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f8246f3590b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f8246f3632b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f82447f63e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f82447fa1ad]
./relax.linuxgccrelease(+0x12c8) [0x56016d39a2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f824696fcb2]
./relax.linuxgccrelease(+0x136e) [0x56016d39a36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7fc5da60b08a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7fc5da60a4f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7fc5da53707b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7fc5da537e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7fc5da53a90b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7fc5da53b32b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7fc5d7dfb3e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7fc5d7dff1ad]
./relax.linuxgccrelease(+0x12c8) [0x55798960d2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7fc5d9f74cb2]
./relax.linuxgccrelease(+0x136e) [0x55798960d36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7ff6f7f4608a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7ff6f7f454f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7ff6f7e7207b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7ff6f7e72e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7ff6f7e7590b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7ff6f7e7632b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7ff6f57363e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7ff6f573a1ad]
./relax.linuxgccrelease(+0x12c8) [0x55a85c1c32c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7ff6f78afcb2]
./relax.linuxgccrelease(+0x136e) [0x55a85c1c336e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f38797bb08a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f38797ba4f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f38796e707b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f38796e7e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f38796ea90b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f38796eb32b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f3876fab3e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f3876faf1ad]
./relax.linuxgccrelease(+0x12c8) [0x556c61e792c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f3879124cb2]
./relax.linuxgccrelease(+0x136e) [0x556c61e7936e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f8cdd34808a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f8cdd3474f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f8cdd27407b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f8cdd274e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f8cdd27790b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f8cdd27832b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f8cdab383e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f8cdab3c1ad]
./relax.linuxgccrelease(+0x12c8) [0x55aea905c2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f8cdccb1cb2]
./relax.linuxgccrelease(+0x136e) [0x55aea905c36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7fbe85fbb08a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7fbe85fba4f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7fbe85ee707b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7fbe85ee7e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7fbe85eea90b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7fbe85eeb32b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7fbe837ab3e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7fbe837af1ad]
./relax.linuxgccrelease(+0x12c8) [0x5632c50472c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7fbe85924cb2]
./relax.linuxgccrelease(+0x136e) [0x5632c504736e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7efdf5cea08a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7efdf5ce94f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7efdf5c1607b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7efdf5c16e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7efdf5c1990b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7efdf5c1a32b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7efdf34da3e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7efdf34de1ad]
./relax.linuxgccrelease(+0x12c8) [0x559e7b9922c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7efdf5653cb2]
./relax.linuxgccrelease(+0x136e) [0x559e7b99236e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7fac3c90008a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7fac3c8ff4f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7fac3c82c07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7fac3c82ce2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7fac3c82f90b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7fac3c83032b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7fac3a0f03e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7fac3a0f41ad]
./relax.linuxgccrelease(+0x12c8) [0x5574129122c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7fac3c269cb2]
./relax.linuxgccrelease(+0x136e) [0x55741291236e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f1c0ef1a08a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f1c0ef194f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f1c0ee4607b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f1c0ee46e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f1c0ee4990b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f1c0ee4a32b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f1c0c70a3e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f1c0c70e1ad]
./relax.linuxgccrelease(+0x12c8) [0x56336e4612c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f1c0e883cb2]
./relax.linuxgccrelease(+0x136e) [0x56336e46136e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7fe3d07a108a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7fe3d07a04f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7fe3d06cd07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7fe3d06cde2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7fe3d06d090b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7fe3d06d132b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7fe3cdf913e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7fe3cdf951ad]
./relax.linuxgccrelease(+0x12c8) [0x55fb08e732c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7fe3d010acb2]
./relax.linuxgccrelease(+0x136e) [0x55fb08e7336e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f94fa5dc08a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f94fa5db4f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f94fa50807b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f94fa508e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f94fa50b90b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f94fa50c32b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f94f7dcc3e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f94f7dd01ad]
./relax.linuxgccrelease(+0x12c8) [0x55a4e59972c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f94f9f45cb2]
./relax.linuxgccrelease(+0x136e) [0x55a4e599736e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f836835708a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f83683564f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f836828307b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f8368283e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f836828690b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f836828732b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f8365b473e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f8365b4b1ad]
./relax.linuxgccrelease(+0x12c8) [0x55d6e6b862c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f8367cc0cb2]
./relax.linuxgccrelease(+0x136e) [0x55d6e6b8636e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f8a8716508a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f8a871644f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f8a8709107b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f8a87091e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f8a8709490b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f8a8709532b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f8a849553e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f8a849591ad]
./relax.linuxgccrelease(+0x12c8) [0x555b6b7a92c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f8a86acecb2]
./relax.linuxgccrelease(+0x136e) [0x555b6b7a936e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f731424a08a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f73142494f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f731417607b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f7314176e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f731417990b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f731417a32b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f7311a3a3e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f7311a3e1ad]
./relax.linuxgccrelease(+0x12c8) [0x563987e1a2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f7313bb3cb2]
./relax.linuxgccrelease(+0x136e) [0x563987e1a36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f0cf0ded08a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f0cf0dec4f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f0cf0d1907b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f0cf0d19e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f0cf0d1c90b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f0cf0d1d32b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f0cee5dd3e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f0cee5e11ad]
./relax.linuxgccrelease(+0x12c8) [0x556fa41672c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f0cf0756cb2]
./relax.linuxgccrelease(+0x136e) [0x556fa416736e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f570246908a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f57024684f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f570239507b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f5702395e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f570239890b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f570239932b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f56ffc593e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f56ffc5d1ad]
./relax.linuxgccrelease(+0x12c8) [0x56179a4a72c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f5701dd2cb2]
./relax.linuxgccrelease(+0x136e) [0x56179a4a736e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7fc45588408a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7fc4558834f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7fc4557b007b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7fc4557b0e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7fc4557b390b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7fc4557b432b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7fc4530743e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7fc4530781ad]
./relax.linuxgccrelease(+0x12c8) [0x55ed7add92c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7fc4551edcb2]
./relax.linuxgccrelease(+0x136e) [0x55ed7add936e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f743601608a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f74360154f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f7435f4207b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f7435f42e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f7435f4590b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f7435f4632b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f74338063e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f743380a1ad]
./relax.linuxgccrelease(+0x12c8) [0x55a0800a32c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f743597fcb2]
./relax.linuxgccrelease(+0x136e) [0x55a0800a336e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f3b8aa2108a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f3b8aa204f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f3b8a94d07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f3b8a94de2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f3b8a95090b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f3b8a95132b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f3b882113e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f3b882151ad]
./relax.linuxgccrelease(+0x12c8) [0x563e277622c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f3b8a38acb2]
./relax.linuxgccrelease(+0x136e) [0x563e2776236e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f9f4d0b208a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f9f4d0b14f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f9f4cfde07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f9f4cfdee2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f9f4cfe190b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f9f4cfe232b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f9f4a8a23e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f9f4a8a61ad]
./relax.linuxgccrelease(+0x12c8) [0x5620583702c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f9f4ca1bcb2]
./relax.linuxgccrelease(+0x136e) [0x56205837036e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f6ed23d208a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f6ed23d14f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f6ed22fe07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f6ed22fee2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f6ed230190b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f6ed230232b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f6ecfbc23e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f6ecfbc61ad]
./relax.linuxgccrelease(+0x12c8) [0x55df1ace12c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f6ed1d3bcb2]
./relax.linuxgccrelease(+0x136e) [0x55df1ace136e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f09d35d708a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f09d35d64f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f09d350307b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f09d3503e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f09d350690b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f09d350732b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f09d0dc73e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f09d0dcb1ad]
./relax.linuxgccrelease(+0x12c8) [0x563178b3c2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f09d2f40cb2]
./relax.linuxgccrelease(+0x136e) [0x563178b3c36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f28d281008a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f28d280f4f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f28d273c07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f28d273ce2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f28d273f90b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f28d274032b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f28d00003e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f28d00041ad]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x12c8) [0x558c0bd922c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f28d2179cb2]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x136e) [0x558c0bd9236e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7fe189da208a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7fe189da14f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7fe189cce07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7fe189ccee2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7fe189cd190b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7fe189cd232b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7fe1875923e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7fe1875961ad]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x12c8) [0x5647baffd2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7fe18970bcb2]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x136e) [0x5647baffd36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7fb70681e08a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7fb70681d4f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7fb70674a07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7fb70674ae2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7fb70674d90b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7fb70674e32b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7fb70400e3e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7fb7040121ad]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x12c8) [0x56444bc752c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7fb706187cb2]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x136e) [0x56444bc7536e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f4bc729308a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f4bc72924f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f4bc71bf07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f4bc71bfe2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f4bc71c290b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f4bc71c332b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f4bc4a833e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f4bc4a871ad]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x12c8) [0x55c6a25982c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f4bc6bfccb2]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x136e) [0x55c6a259836e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7eff97bb508a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7eff97bb44f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7eff97ae107b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7eff97ae1e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7eff97ae490b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7eff97ae532b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7eff953a53e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7eff953a91ad]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x12c8) [0x55fbacebb2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7eff9751ecb2]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x136e) [0x55fbacebb36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f1c4a88908a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f1c4a8884f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f1c4a7b507b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f1c4a7b5e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f1c4a7b890b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f1c4a7b932b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f1c480793e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f1c4807d1ad]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x12c8) [0x5652d01ea2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f1c4a1f2cb2]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x136e) [0x5652d01ea36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f83f579008a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7f83f578f4f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7f83f56bc07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7f83f56bce2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f83f56bf90b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7f83f56c032b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f83f2f803e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7f83f2f841ad]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x12c8) [0x55673637a2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7f83f50f9cb2]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x136e) [0x55673637a36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7fac1c44e08a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7fac1c44d4f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7fac1c37a07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7fac1c37ae2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7fac1c37d90b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7fac1c37e32b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7fac19c3e3e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7fac19c421ad]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x12c8) [0x563739a492c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7fac1bdb7cb2]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x136e) [0x563739a4936e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7fb89944c08a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7fb89944b4f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7fb89937807b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7fb899378e2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7fb89937b90b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7fb89937c32b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7fb896c3c3e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7fb896c401ad]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x12c8) [0x56362f84d2c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7fb898db5cb2]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x136e) [0x56362f84d36e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.50+release.1295438
[COMMIT_DATE]: 2020-12-13T21:33:15.479874
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version “10.2.0”
[STDLIB]: libstdc++ version 20200930
[START_OPTIONS]
NO OPTIONS SPECIFIED
[END_OPTIONS]
[START_BACKTRACE]: RAW_LIBC
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7fd83e21308a]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe0) [0x7fd83e2124f0]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool)+0x92b) [0x7fd83e13f07b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12f) [0x7fd83e13fe2f]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7fd83e14290b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x1db) [0x7fd83e14332b]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7fd83ba033e4]
/home/ubuntu/Rosetta/main/source/build/src/release/linux/5.8/64/x86/gcc/10/default/libcore.6.so(core::init::init(int, char**)+0x2d) [0x7fd83ba071ad]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x12c8) [0x5635f10392c8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf2) [0x7fd83db7ccb2]
/home/ubuntu/Rosetta/main/source/bin/relax.linuxgccrelease(+0x136e) [0x5635f103936e]
[END_BACKTRACE]
[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1435
[START_MESSAGE]
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
[END_MESSAGE]
[END_CRASH_REPORT]
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January 15, 2021 at 4:06 pm #15682
Use -out:prefix instead of just prefix. From the error:
Unique best command line context option match not found for -prefix.
Possible matches include:
-out:prefix
-antibody:prefix
-contactMap:prefix
-dump_trajectory:prefix
-matdes:prefix
-ms:checkpoint:prefix
-ProQ:prefix
-templates:prefix
Either specify namespace from command line; or in code, use add_relevant() to register option.
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