Rosetta: Clustering

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    • June 11, 2016 at 9:44 pm #2439
      Anonymous

        Hi,

        I have used rosetta protein-protein docking to generate 1000 models, and was hoping to use rosetta clustering to analyze the result. 

        I have read that rosetta clustering superimposes models for rmsd calculation by default, and I was hoping to find a way to change this default mode for my models.

        Is there a way to turn this default mode off? 

        P.S. I do not have a native structure (protein-protein docked structure) for my proteins of interest, so  my intent was to cluster them based on their non-superimposed rmsd values. 

         

        Thank you,

        Stephanie

      • July 12, 2016 at 3:36 pm #11729
        Anonymous

          The option “-cluster:skip_align” should do a non-superimposed rmsd.

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