Rosetta phenix1.18 mr_rosetta ubuntu18.04

[Anonymous]

dear Rosetta,

    When I try to intergrate rosetta with phenix, I recieve follow issues:

rosetta.build_phenix_interface nproc=8

Substituting phenix.python into build shell scripts

  update_options.sh

  update_ResidueType_enum_files.sh

  Phenix modules found : /usr/local/phenix-1.18.2-3874/modules/phenix

Traceback (most recent call last):

  File “/usr/local/phenix-1.18.2-3874/build/../modules/phenix/phenix/command_line/rosetta_build_phenix_interface.py”, line 268, in <module>

    run(sys.argv[1:])

  File “/usr/local/phenix-1.18.2-3874/build/../modules/phenix/phenix/command_line/rosetta_build_phenix_interface.py”, line 228, in run

    f=file(“dispatcher_include_erraser.sh”, “wb”)

IOError: [Errno 13] Permission denied: ‘dispatcher_include_erraser.sh’

 

---

My steps are following:

1: rosetta has been installed sucessfully(I try abinito turiol)

2: I install the phenix 1.18 

3: I open the terminal ,exprot PHENIX_ROSETTA_PATH and ROSETTA3_DB, and I check use command echo $

4: I copy the site.settings file

to ${PHENIX_ROSETTA_PATH}/main/source/tools/build/site.settings

5: then I type the command rosetta.build_phenix_interface nproc=8,then error.

How can I solve it?

[Anonymous]

hello,

the error:

IOError: [Errno 13] Permission denied: 'dispatcher_include_erraser.sh'

means you are unable to write the file due to your os’s permissions.

I’m not sure what directory you’re installing in, but I would you can either install under your /home directory instead of /usr

or, you could run your command as root via the following (less recommended) 

sudo rosetta.build_phenix_interface nproc=8

 

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