Setting output values using a database (with relax app)

[Anonymous]

Hello all,

I noticed rosetta creates 23 tables in MySQL when using it as output backend in the RELAX application.

For my specific research I only need to hold the per-residue energies and the total energies… I don’t need the atoms, topology or PDB data to be saved after each cycle, as it consumes a lot of memory.

Question: Is there a flag where I can narrow which output should be exported to the Database?

I read about database filters, but there is hardly any documentation on how to use them.

I believe I can always manually copy what I need to my own result table (with a script) and simply flush the rosetta tables afterwards… but this is far from ideal.

Thanks in advance.

Best

Pedro

[Anonymous]

Well… it turns out this doesn’t seem to be documented.

I had to write a PDB file scavenger to get residue energies from the output.

[Author]

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