simple_cycpep_predict with N-term acetylation

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    • December 17, 2021 at 5:49 pm #3887
      Anonymous

        Hi all,

        I am trying to explore with simple_cycpep_predict using compstatin (from 2QKI as a toy example).  This molecule is both N-term acetylated and C-term amidated, and I am having the hardest time trying to specify those modifications.  As far as I understand it, simple_cycpep_predict doesn’t use fasta format as input but uses space delimted 3 letter code to specify peptide sequence (the file that I am using is attached here).  I tried using -extra_patch_fa with N_acetylated.txt but it doesn’t seem to do anything.  Can someone point me in the right direction?

        Best,

        Ken

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