test/run.py errors

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    • April 29, 2011 at 1:57 pm #889
      Anonymous

        When I input test/run.py on /resetta_source in rhel5.6 or 6,I all got the follow erros,
        [root@localhost rosetta_source]# test/run.py -database /rosetta/rosetta_database
        Identifying platform…

        Platform found: debug/linux/2.6/64/x86/gcc/
        Paths: cd build/test/debug/linux/2.6/64/x86/gcc/ && command line: ./protocols.test –database atabase
        bash: ./protocols.test: No such file or directory
        Paths: cd build/test/debug/linux/2.6/64/x86/gcc/ && command line: ./core.test –database atabase
        bash: ./core.test: No such file or directory
        Paths: cd build/test/debug/linux/2.6/64/x86/gcc/ && command line: ./ObjexxFCL.test –database atabase
        Running 0 tests
        All tests passed!
        Paths: cd build/test/debug/linux/2.6/64/x86/gcc/ && command line: ./numeric.test –database atabase
        bash: ./numeric.test: No such file or directory
        Paths: cd build/test/debug/linux/2.6/64/x86/gcc/ && command line: ./utility.test –database atabase
        bash: ./utility.test: No such file or directory
        Paths: cd build/test/debug/linux/2.6/64/x86/gcc/ && command line: ./apps.test –database atabase
        Running 1 test
        Test suite: LigandDockTest (test/apps/public/ligand_docking/ligand_dock.cxxtest.hh)
        core.init: Mini-Rosetta version Exported from unknown
        core.init: command: ./apps.test –database atabase -run:constant_seed -run:rng mt19937 -in:file:s apps/public/ligand_docking/7cpa_7cpa_input.pdb -in:file:native apps/public/ligand_docking/7cpa_7cpa_native.pdb -out:path:pdb apps/public/ligand_docking -packing:no_optH -docking:randomize2 -docking:uniform_trans 5 -docking:ligand:start_from -1.731 32.589 -5.039 -docking:ligand:minimize_ligand -docking:ligand:harmonic_torsions 10
        core.init: Constant seed mode, seed=1111111 seed_offset=0 real_seed=1111111
        core.init.random: RandomGenerator:init: Normal mode, seed=1111111 RG_type=mt19937
        Warning: Unable to locate database file chemical/residue_type_sets/fa_standard

        ERROR: Unable to open file: atabase/chemical/residue_type_sets/fa_standard/residue_types.txt

        ERROR:: Exit from: src/core/chemical/ResidueTypeSet.cc line: 96
        apps.test: src/utility/exit.cc:120: void utility::exit(const std::string&, int, const std::string&, int): Assertion `false’ failed.
        Paths: cd build/test/debug/linux/2.6/64/x86/gcc/ && command line: ./devel.test –database atabase
        bash: ./devel.test: No such file or directory
        Unable to read yaml file with test results build/test/debug/linux/2.6/64/x86/gcc//core.test.yaml – unit test run aborted!

      • April 29, 2011 at 3:22 pm #5503
        Anonymous

          A) It appears you haven’t compiled the unit tests – did you compile them with “scons mode=release cat=test”? From your other thread, you may be using MPI; you’ll need to compile main Rosetta in not-MPI mode beforehand.

          B) You’re using the wrong database flag; it’s just -d. (This may be wrong in the documentation, try test/run.py -help). You may also need the –mode=”release” flag if you compile the tests in release mode.

        • April 29, 2011 at 7:30 pm #5508
          Anonymous

            Thank you,I also have a question,in which directory the commands “scons -j8 mode=release bin
            and scons -j8 cat=test mode=release” were used,do the unit tests must be run the command “scons -j8 mode=release bin” on the directory /rosetta/rosetta_source first?

          • April 29, 2011 at 7:56 pm #5509
            Anonymous

              I deleted the main rosetta folder,and reinstall it again,
              First,run “scons -j8 mode=release bin” command in /rosetta/rosetta_source directory,it looks like passed.

              Second,run “scons -j8 cat=test mode=release” also in /rosetta/rosetta_source directory,it got a error in the last part:
              …
              g++ -o build/test/release/linux/2.6/64/x86/gcc/core/util/MetricValueIO.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/util/MetricValueIO.cxxtest.cpp
              scons: *** [build/test/release/linux/2.6/64/x86/gcc/devel/devel.cxxtest.cpp] Source `test/devel/devel.cxxtest.hh’ not found, needed by target `build/test/release/linux/2.6/64/x86/gcc/devel/devel.cxxtest.cpp’.
              scons: building terminated because of errors.

              Third,run “python test/run.py -d /rosetta/rosetta_database” also in /rosetta/rosetta_source directory,it got a error:
              [root@localhost rosetta_source]# python test/run.py -d /rosetta/rosetta_database
              Identifying platform…

              Platform found: debug/linux/2.6/64/x86/gcc/
              Paths: cd build/test/debug/linux/2.6/64/x86/gcc/ && command line: ./protocols.test –database /rosetta/rosetta_database
              /bin/sh: line 0: cd: build/test/debug/linux/2.6/64/x86/gcc/: No such file or directory
              Traceback (most recent call last):
              File “test/run.py”, line 321, in
              if __name__ == “__main__”: main(sys.argv)
              File “test/run.py”, line 314, in main
              T.runUnitTests()
              File “test/run.py”, line 177, in runUnitTests
              self.runOneLibUnitTests(platform, lib, yaml_file, log_file)
              File “test/run.py”, line 151, in runOneLibUnitTests
              f = open(log_file, ‘w’); f.write(output); f.close()
              IOError: [Errno 2] No such file or directory: ‘build/test/debug/linux/2.6/64/x86/gcc//protocols.test.log’

              How should I do to solve the errors above?

            • May 2, 2011 at 1:04 am #5522
              Anonymous

                This is the problem:

                “scons: *** Source `test/devel/devel.cxxtest.hh’ not found, needed by target `build/test/release/linux/2.6/64/x86/gcc/devel/devel.cxxtest.cpp’. Stop.”

                And this describes the solution:
                http://www.rosettacommons.org/content/rosetta-321-centos-5-x8664-gcc-scons-cattest-moderelease-failure#comment-2520

              • May 3, 2011 at 1:32 pm #5530
                Anonymous

                  You can run it with –mute-“all” to get rid of the Rosetta output and only see the testing output.

                  You can modify this line:
                  UnitTestExecutable = [“protocols.test”, “core.test”, “ObjexxFCL.test”, “numeric.test”, “utility.test”, “apps.test”, “devel.test”]

                  by removing devel.test to make it stop complaining about the absence of devel.

                • May 3, 2011 at 2:18 pm #5532
                  Anonymous

                    The dunbrack failure concerns me; I am looking into it locally, but I don’t expect to be able to reproduce it. Is it possible you used an old copy of the database (perhaps from 3.1?)

                    I am going to make sure that 3.3 ships with the unit tests intact…

                  • August 24, 2013 at 5:54 pm #9234
                    Anonymous

                      python test/run.py -d /rosetta3.2/rosetta_database –mode=release UnitTestExecutable = [“protocols.test”, “core.test”, “ObjexxFCL.test”, “numeric.test”, “utility.test”, “apps.test”, “devel.test”] –mute=MUTE-all
                      I got following error:

                      ….
                      Paths: cd build/test/release/linux/3.5/32/x86/gcc/ && command line: ./apps.test –database /rosetta3.2/rosetta_database -mute MUTE-all
                      Running 1 test
                      Test suite: LigandDockTest (test/apps/public/ligand_docking/ligand_dock.cxxtest.hh)
                      core.init: Mini-Rosetta version exported from unknown
                      core.init: command: ./apps.test –database /rosetta3.2/rosetta_database -mute MUTE-all -run:constant_seed -run:rng mt19937 -in:file:s apps/public/ligand_docking/7cpa_7cpa_input.pdb -in:file:native apps/public/ligand_docking/7cpa_7cpa_native.pdb -out:path:pdb apps/public/ligand_docking -packing:no_optH -docking:randomize2 -docking:uniform_trans 5 -docking:ligand:start_from -1.731 32.589 -5.039 -docking:ligand:minimize_ligand -docking:ligand:harmonic_torsions 10
                      core.init: Constant seed mode, seed=1111111 seed_offset=0 real_seed=1111111
                      core.init.random: RandomGenerator:init: Normal mode, seed=1111111 RG_type=mt19937
                      Warning: Unable to locate database file chemical/residue_type_sets/fa_standard

                      ERROR: Unable to open file: /rosetta3.2/rosetta_database/chemical/residue_type_sets/fa_standard/residue_types.txt

                      ERROR:: Exit from: src/core/chemical/ResidueTypeSet.cc line: 96
                      Paths: cd build/test/release/linux/3.5/32/x86/gcc/ && command line: ./devel.test –database /rosetta3.2/rosetta_database -mute MUTE-all
                      bash: ./devel.test: No such file or directory
                      Unable to read yaml file with test results build/test/release/linux/3.5/32/x86/gcc//devel.test.yaml – unit test run aborted!

                    • April 29, 2011 at 4:41 pm #5506
                      Anonymous

                        Hi,thank you for your quick reply by email and forum,this is my intall steps after you suggested,
                        1.scons bin -j8 #debug version
                        2.scons mode=release cat=test -j8
                        3.python test/run.py -d /rosetta/rosetta_database
                        4.scons bin mode=release -j8 #release version
                        but in 2,I also got some errors:
                        [root@localhost rosetta_source]# scons mode=release cat=test -j8
                        scons: Reading SConscript files …
                        svn: “.”Not working copy

                        scons: warning: The build_dir keyword has been deprecated; use the variant_dir keyword instead.
                        File “/rosetta/rosetta_source/SConscript”, line 40, in

                        scons: warning: The build_dir keyword has been deprecated; use the variant_dir keyword instead.
                        File “/rosetta/rosetta_source/SConscript”, line 40, in

                        scons: warning: The build_dir keyword has been deprecated; use the variant_dir keyword instead.
                        File “/rosetta/rosetta_source/SConscript”, line 40, in

                        scons: warning: The build_dir keyword has been deprecated; use the variant_dir keyword instead.
                        File “/rosetta/rosetta_source/SConscript”, line 40, in

                        scons: warning: The build_dir keyword has been deprecated; use the variant_dir keyword instead.
                        File “/rosetta/rosetta_source/SConscript”, line 40, in

                        scons: warning: The build_dir keyword has been deprecated; use the variant_dir keyword instead.
                        File “/rosetta/rosetta_source/SConscript”, line 40, in

                        scons: warning: The build_dir keyword has been deprecated; use the variant_dir keyword instead.
                        File “/rosetta/rosetta_source/SConscript”, line 40, in
                        scons: done reading SConscript files.
                        scons: Building targets …
                        g++ -o build/test/release/linux/2.6/64/x86/gcc/ObjexxFCL.test -Wl,-rpath=/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/ build/test/release/linux/2.6/64/x86/gcc/ObjexxFCL/ObjexxFCL.cxxtest.o -Llib -Lexternal/lib -Lbuild/src/release/linux/2.6/64/x86/gcc -L/usr/local/lib -L/usr/lib -lObjexxFCL
                        /usr/bin/ld: cannot find -lObjexxFCL
                        collect2: ld returned 1 exit status
                        g++ -o build/test/release/linux/2.6/64/x86/gcc/apps.test -Wl,-rpath=/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/ build/test/release/linux/2.6/64/x86/gcc/apps/public/ligand_docking/ligand_dock.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/apps/apps.cxxtest.o -Llib -Lexternal/lib -Lbuild/src/release/linux/2.6/64/x86/gcc -L/usr/local/lib -L/usr/lib -lprotocols -lcore -lutility -lnumeric -lObjexxFCL -lz
                        /usr/bin/ld: cannot find -lprotocols
                        collect2: ld returned 1 exit status
                        external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/fragment/OrderedFragSet.cxxtest.cpp test/core/fragment/OrderedFragSet.cxxtest.hh
                        external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/fragment/picking/FragmentCandidatesTests.cxxtest.cpp test/core/fragment/picking/FragmentCandidatesTests.cxxtest.hh
                        external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/fragment/picking/TorsionBinIO.cxxtest.cpp test/core/fragment/picking/TorsionBinIO.cxxtest.hh
                        external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/fragment/picking/vall/vall.cxxtest.cpp test/core/fragment/picking/vall/vall.cxxtest.hh
                        external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/graph/ArrayPool.cxxtest.cpp test/core/graph/ArrayPool.cxxtest.hh
                        scons: *** [build/test/release/linux/2.6/64/x86/gcc/ObjexxFCL.test] Error 1
                        external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/graph/DisjointSets.cxxtest.cpp test/core/graph/DisjointSets.cxxtest.hh
                        scons: *** [build/test/release/linux/2.6/64/x86/gcc/apps.test] Error 1
                        scons: building terminated because of errors.

                      • April 29, 2011 at 6:23 pm #5507
                        Anonymous

                          You have to compile the unit tests with the same settings you compile the Rosetta library with.

                          Either:

                          scons -j8 bin
                          scons -j8 cat=test

                          Or:

                          scons -j8 mode=release bin
                          scons -j8 cat=test mode=release

                          Your step 2 (release tests) will fail if you haven’t built the release mode libraries yet.

                        • April 29, 2011 at 10:57 pm #5510
                          Anonymous

                            You still need “–mode=release” on your test.py command line. Try “test/run.py -help” for the list of exactly how to phrase it.

                          • April 30, 2011 at 1:53 am #5511
                            Anonymous

                              smlewis,thank you ,I added “–mode=release” flag in test/run.py,but I also got the error,
                              [root@localhost rosetta_source]# test/run.py -d /rosetta/rosetta_database -j8 –mode=release
                              Identifying platform…

                              Platform found: release/linux/2.6/64/x86/gcc/
                              Paths: cd build/test/release/linux/2.6/64/x86/gcc/ && command line: ./protocols.test –database /rosetta/rosetta_database
                              Paths: cd build/test/release/linux/2.6/64/x86/gcc/ && command line: ./core.test –database /rosetta/rosetta_database
                              Paths: cd build/test/release/linux/2.6/64/x86/gcc/ && command line: ./ObjexxFCL.test –database /rosetta/rosetta_database
                              Paths: cd build/test/release/linux/2.6/64/x86/gcc/ && command line: ./numeric.test –database /rosetta/rosetta_database
                              Paths: cd build/test/release/linux/2.6/64/x86/gcc/ && command line: ./utility.test –database /rosetta/rosetta_database
                              Paths: cd build/test/release/linux/2.6/64/x86/gcc/ && command line: ./apps.test –database /rosetta/rosetta_database
                              Paths: cd build/test/release/linux/2.6/64/x86/gcc/ && command line: ./devel.test –database /rosetta/rosetta_database
                              bash: ./core.test: 没有那个文件或目录
                              Running 0 tests
                              All tests passed!
                              bash: ./protocols.test: No such file or directory
                              Running 1 test
                              Test suite: LigandDockTest (test/apps/public/ligand_docking/ligand_dock.cxxtest.hh)
                              core.init: Mini-Rosetta version Exported from unknown
                              core.init: command: ./apps.test –database /rosetta/rosetta_database -run:constant_seed -run:rng mt19937 -in:file:s apps/public/ligand_docking/7cpa_7cpa_input.pdb -in:file:native apps/public/ligand_docking/7cpa_7cpa_native.pdb -out:path:pdb apps/public/ligand_docking -packing:no_optH -docking:randomize2 -docking:uniform_trans 5 -docking:ligand:start_from -1.731 32.589 -5.039 -docking:ligand:minimize_ligand -docking:ligand:harmonic_torsions 10
                              core.init: Constant seed mode, seed=1111111 seed_offset=0 real_seed=1111111
                              core.init.random: RandomGenerator:init: Normal mode, seed=1111111 RG_type=mt19937
                              core.scoring.dunbrack.SingleLigandRotamerLibrary: Read in 10 rotamers for CP1!
                              core.scoring.dunbrack: Dunbrack library took 0.12 seconds to load from binary
                              Warning: No AA record found for AQ1; assuming UNK
                              core.pack.task: Packer task: initialize from command line()
                              All tests passed!
                              bash: ./devel.test: No such file or directory
                              bash: ./utility.test: No such file or directory
                              bash: ./numeric.test: No such file or directory
                              Unable to read yaml file with test results build/test/release/linux/2.6/64/x86/gcc//core.test.yaml – unit test run aborted!

                            • April 30, 2011 at 7:44 pm #5515
                              Anonymous

                                You should run both the “scons -j8 mode=release bin” and the “scons -j8 cat=test mode=release” in the root directory of the Rosetta installation (the one with the src/ and test/ subdirectories).

                                Unfortunately, the “cat=test” builds aren’t smart enough to know about rebuilding the Rosetta library, so you always have to run the equivalent without-“cat=test” scons command *before* you run the with-“cat=test” build command.

                              • April 30, 2011 at 11:38 pm #5517
                                Anonymous

                                  It is still reporting that your test binaries are missing. Show me your compile command for testing (should resemble ‘python scons.py cat=test mode=release’ and its output.

                                • May 1, 2011 at 7:49 am #5521
                                  Anonymous

                                    Hi,smlewis,when I input “python scons.py -j8 cat=test mode=release”,it showed me that:
                                    al.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/UnfoldedStatePotential.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/VirtualResidues.cxxtest.cpp test/core/scoring/VirtualResidues.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/VirtualResidues.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/VirtualResidues.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/carbon_hbonds/CarbonHBondEnergy.cxxtest.cpp test/core/scoring/carbon_hbonds/CarbonHBondEnergy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/carbon_hbonds/CarbonHBondEnergy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/carbon_hbonds/CarbonHBondEnergy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/AngleConstraint.cxxtest.cpp test/core/scoring/constraints/AngleConstraint.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/AngleConstraint.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/AngleConstraint.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/AtomPairConstraint.cxxtest.cpp test/core/scoring/constraints/AtomPairConstraint.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/AtomPairConstraint.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/AtomPairConstraint.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/BigBinConstraint.cxxtest.cpp test/core/scoring/constraints/BigBinConstraint.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/BigBinConstraint.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/BigBinConstraint.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/ConstraintSetRemapping.cxxtest.cpp test/core/scoring/constraints/ConstraintSetRemapping.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/ConstraintSetRemapping.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/ConstraintSetRemapping.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/ConstraintsEnergy.cxxtest.cpp test/core/scoring/constraints/ConstraintsEnergy.cxxtest.hh
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/DihedralConstraint.cxxtest.cpp test/core/scoring/constraints/DihedralConstraint.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/ConstraintsEnergy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/ConstraintsEnergy.cxxtest.cpp
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/DihedralConstraint.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/DihedralConstraint.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/GaussianFunc.cxxtest.cpp test/core/scoring/constraints/GaussianFunc.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/GaussianFunc.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/GaussianFunc.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/HarmonicFunc.cxxtest.cpp test/core/scoring/constraints/HarmonicFunc.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/HarmonicFunc.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/HarmonicFunc.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/SplineFunc.cxxtest.cpp test/core/scoring/constraints/SplineFunc.cxxtest.hh
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/util.cxxtest.cpp test/core/scoring/constraints/util.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/SplineFunc.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/SplineFunc.cxxtest.cpp
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/util.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/constraints/util.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/custom_pair_distance/FullatomCustomPairDistanceEnergy.cxxtest.cpp test/core/scoring/custom_pair_distance/FullatomCustomPairDistanceEnergy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/custom_pair_distance/FullatomCustomPairDistanceEnergy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/custom_pair_distance/FullatomCustomPairDistanceEnergy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/disulfides/FullatomDisulfideEnergy.cxxtest.cpp test/core/scoring/disulfides/FullatomDisulfideEnergy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/disulfides/FullatomDisulfideEnergy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/disulfides/FullatomDisulfideEnergy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/dunbrack/Dunbrack.cxxtest.cpp test/core/scoring/dunbrack/Dunbrack.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/dunbrack/Dunbrack.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/dunbrack/Dunbrack.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/etable/EtableEnergy.cxxtest.cpp test/core/scoring/etable/EtableEnergy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/etable/EtableEnergy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/etable/EtableEnergy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/geometric_solvation/GeometricSolEnergy.cxxtest.cpp test/core/scoring/geometric_solvation/GeometricSolEnergy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/geometric_solvation/GeometricSolEnergy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/geometric_solvation/GeometricSolEnergy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/hackelec/HackElecEnergy.cxxtest.cpp test/core/scoring/hackelec/HackElecEnergy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/hackelec/HackElecEnergy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/hackelec/HackElecEnergy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/HBondDatabaseTest.cxxtest.cpp test/core/scoring/hbonds/HBondDatabaseTest.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/HBondDatabaseTest.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/HBondDatabaseTest.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/HBondDerivTest.cxxtest.cpp test/core/scoring/hbonds/HBondDerivTest.cxxtest.hh

                                    scons: warning: Ignoring corrupt sconsign entry : src/numeric/deriv ((‘object.__new__(X): X is not a type object (classobj)’, , (, , None)))

                                    File “scons.py”, line 162, in
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/HBondDerivTest.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/HBondDerivTest.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/HBondEnergy.cxxtest.cpp test/core/scoring/hbonds/HBondEnergy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/HBondEnergy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/HBondEnergy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/HBondFadeIntervalTest.cxxtest.cpp test/core/scoring/hbonds/HBondFadeIntervalTest.cxxtest.hh

                                    scons: warning: Ignoring corrupt sconsign entry : external/boost_1_38_0/boost/iterator/detail ((‘object.__new__(X): X is not a type object (classobj)’, , (, , None)))

                                    File “scons.py”, line 162, in

                                    scons: warning: Ignoring corrupt sconsign entry : external/boost_1_38_0/boost/iterator ((‘object.__new__(X): X is not a type object (classobj)’, , (, , None)))

                                    File “scons.py”, line 162, in

                                    scons: warning: Ignoring corrupt sconsign entry : external/boost_1_38_0/boost/preprocessor/seq ((‘object.__new__(X): X is not a type object (classobj)’, , (, , None)))

                                    File “scons.py”, line 162, in

                                    scons: warning: Ignoring corrupt sconsign entry : external/boost_1_38_0/boost/preprocessor/seq/detail ((‘object.__new__(X): X is not a type object (classobj)’, , (, , None)))

                                    File “scons.py”, line 162, in
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/HBondFadeIntervalTest.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/HBondFadeIntervalTest.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/HBonds.cxxtest.cpp test/core/scoring/hbonds/HBonds.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/HBonds.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/HBonds.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/polynomial.cxxtest.cpp test/core/scoring/hbonds/polynomial.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/polynomial.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/hbonds/polynomial.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/ChainbreakEnergy.cxxtest.cpp test/core/scoring/methods/ChainbreakEnergy.cxxtest.hh
                                    ./test/core/scoring/hbonds/HBondFadeIntervalTest.cxxtest.hh: In member function ‘void HBondFadeIntervalTest::doubleprint(std::ostream&, double)’:
                                    ./test/core/scoring/hbonds/HBondFadeIntervalTest.cxxtest.hh:381: warning: dereferencing type-punned pointer will break strict-aliasing rules
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/ChainbreakEnergy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/ChainbreakEnergy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/ContactOrderEnergy.cxxtest.cpp test/core/scoring/methods/ContactOrderEnergy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/ContactOrderEnergy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/ContactOrderEnergy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/LinearChainbreakEnergy.cxxtest.cpp test/core/scoring/methods/LinearChainbreakEnergy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/LinearChainbreakEnergy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/LinearChainbreakEnergy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/MMBondAngleEnergy.cxxtest.cpp test/core/scoring/methods/MMBondAngleEnergy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/MMBondAngleEnergy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/MMBondAngleEnergy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/MMTorsionEnergy.cxxtest.cpp test/core/scoring/methods/MMTorsionEnergy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/MMTorsionEnergy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/MMTorsionEnergy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/P_AA_Energy.cxxtest.cpp test/core/scoring/methods/P_AA_Energy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/P_AA_Energy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/P_AA_Energy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/P_AA_pp_Energy.cxxtest.cpp test/core/scoring/methods/P_AA_pp_Energy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/P_AA_pp_Energy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/P_AA_pp_Energy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/PairEnergy.cxxtest.cpp test/core/scoring/methods/PairEnergy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/PairEnergy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/PairEnergy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/ProClosureEnergy.cxxtest.cpp test/core/scoring/methods/ProClosureEnergy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/ProClosureEnergy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/ProClosureEnergy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/RG_Energy.cxxtest.cpp test/core/scoring/methods/RG_Energy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/RG_Energy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/RG_Energy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/RamachandranEnergy.cxxtest.cpp test/core/scoring/methods/RamachandranEnergy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/RamachandranEnergy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/RamachandranEnergy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/UnfoldedStateEnergy.cxxtest.cpp test/core/scoring/methods/UnfoldedStateEnergy.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/UnfoldedStateEnergy.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/methods/UnfoldedStateEnergy.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/rms_util.cxxtest.cpp test/core/scoring/rms_util.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/rms_util.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/rms_util.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/sasa.cxxtest.cpp test/core/scoring/sasa.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/sasa.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/sasa.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/symmetry/SymmetricScoreTest.cxxtest.cpp test/core/scoring/symmetry/SymmetricScoreTest.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/scoring/symmetry/SymmetricScoreTest.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/scoring/symmetry/SymmetricScoreTest.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/sequence/ScoringSchemes.cxxtest.cpp test/core/sequence/ScoringSchemes.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/sequence/ScoringSchemes.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/sequence/ScoringSchemes.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/sequence/SequenceAlignment.cxxtest.cpp test/core/sequence/SequenceAlignment.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/sequence/SequenceAlignment.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/sequence/SequenceAlignment.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/sequence/SequenceMapping.cxxtest.cpp test/core/sequence/SequenceMapping.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/sequence/SequenceMapping.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/sequence/SequenceMapping.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/sequence/SequenceUtil.cxxtest.cpp test/core/sequence/SequenceUtil.cxxtest.hh
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/sequence/SequenceUtil.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/sequence/SequenceUtil.cxxtest.cpp
                                    external/cxxtest/cxxtestgen.py –have-std –part -o build/test/release/linux/2.6/64/x86/gcc/core/util/MetricValueIO.cxxtest.cpp test/core/util/MetricValueIO.cxxtest.hh

                                    scons: warning: Ignoring corrupt sconsign entry : src/utility/tools ((‘object.__new__(X): X is not a type object (classobj)’, , (, , None)))

                                    File “scons.py”, line 162, in
                                    g++ -o build/test/release/linux/2.6/64/x86/gcc/core/util/MetricValueIO.cxxtest.o -c -std=c++98 -pipe -ffor-scope -W -Wall -pedantic -Wno-long-long -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -DNDEBUG -Iexternal/cxxtest -I. -Itest -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_38_0 -I/usr/local/include -I/usr/include build/test/release/linux/2.6/64/x86/gcc/core/util/MetricValueIO.cxxtest.cpp
                                    scons: *** Source `test/devel/devel.cxxtest.hh’ not found, needed by target `build/test/release/linux/2.6/64/x86/gcc/devel/devel.cxxtest.cpp’. Stop.
                                    scons: building terminated because of errors.

                                  • May 3, 2011 at 8:23 am #5529
                                    Anonymous

                                      Hi,smlewis,thank you very much,it seems to be working well,
                                      when I run “scons -j8 cat=test mode=release”
                                      …
                                      /gcc/utility/keys/SmallKeyVector.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/keys/UserKey.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/factory/Factory.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/signals/BufferedSignalHub.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/signals/PausableSignalHub.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/signals/SignalHub.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/signals/TokenHub.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/io/izstream.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/io/zipstream.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/pointer/access_ptr.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/pointer/owning_ptr.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/pointer/owning_ptr_MI.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/utility.cxxtest.o -Llib -Lexternal/lib -Lbuild/src/release/linux/2.6/64/x86/gcc -L/usr/local/lib -L/usr/lib -lutility -lObjexxFCL -lz
                                      /usr/bin/ld: skipping incompatible /usr/lib/libz.so when searching for -lz
                                      /usr/bin/ld: skipping incompatible /usr/lib/libz.a when searching for -lz
                                      /usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
                                      /usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
                                      /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
                                      /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
                                      Copy(“build/test/release/linux/2.6/64/x86/gcc//utility/io/no_final_newline.txt”, “test/utility/io/no_final_newline.txt”)
                                      scons: done building targets.
                                      when I run “test/run.py -d /rosetta/rosetta_database -j8 –mode=release”
                                      …
                                      0.81 0.00 0.89 -0.04 0.29
                                      protocols.moves.ScoreMover: E(i) 97 -3.95 1.86 1.68 1.36 4.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.15 0.08 1.67 -1.91 0.02
                                      protocols.moves.ScoreMover: E(i) 98 -5.37 0.89 1.33 0.83 3.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.06 2.50 1.41 0.02
                                      protocols.moves.ScoreMover: E(i) 99 -4.05 2.25 2.56 2.00 0.00 -0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.15 2.73 -0.01 0.56
                                      protocols.moves.ScoreMover: E(i) 100 -3.98 0.95 2.08 1.10 0.00 -0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.53 0.11 5.70 -0.16 -0.65
                                      protocols.moves.ScoreMover: E(i) 101 -8.48 1.23 3.58 6.95 0.00 0.00 0.00 0.00 -0.02 0.00 0.00 0.00 0.00 0.00 -0.70 0.04 3.28 0.40 0.51
                                      protocols.moves.ScoreMover: E(i) 102 -9.33 12.62 7.73 11.00 0.00 -0.64 0.00 0.00 -0.64 0.00 0.00 0.00 0.00 0.00 -0.97 0.21 28.26 -0.25 -0.98
                                      protocols.moves.ScoreMover: E(i) 103 -3.38 0.71 2.00 2.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 13.82 -0.13 -0.34
                                      protocols.moves.ScoreMover: E(i) 104 -3.75 2.57 3.71 1.53 0.00 0.00 0.00 0.00 0.00 -0.03 0.00 0.00 0.00 0.00 0.25 0.16 2.64 -0.27 -0.27
                                      protocols.moves.ScoreMover: E(i) 105 -1.71 1.96 1.65 0.60 0.00 -0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.98 0.15 4.67 0.12 -0.89
                                      protocols.moves.ScoreMover: E(i) 106 -1.12 0.70 0.88 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.17 15.76 0.35 -0.34
                                      protocols.moves.ScoreMover: E(i) 107 -3.19 2.10 2.60 1.10 0.00 -0.03 0.00 0.00 0.00 -0.03 0.00 0.00 0.00 0.00 0.93 0.18 12.99 0.09 -0.97
                                      protocols.moves.ScoreMover: E(i) 108 -1.64 3.57 1.35 0.00 0.00 0.00 0.00 0.00 -0.02 0.00 0.00 0.00 0.00 0.00 0.96 0.07 0.00 -1.81 -0.17
                                      protocols.moves.ScoreMover: E(i) 109 -3.39 1.11 2.04 2.51 0.00 -0.25 0.00 0.00 0.00 -0.06 0.00 0.00 0.00 0.00 -0.33 0.04 8.40 -0.36 -0.81
                                      protocols.moves.ScoreMover: E(i) 110 -2.44 4.82 1.86 0.33 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.10 0.71 -0.06 -0.37
                                      protocols.moves.ScoreMover: E(i) 111 -4.96 0.84 4.32 2.92 0.00 -0.23 0.00 0.00 -0.37 -0.43 0.00 0.00 0.00 0.00 0.95 0.00 9.82 1.03 -0.98
                                      protocols.moves.ScoreMover: E(i) 112 -7.51 1.30 3.66 6.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -1.40 0.50 3.29 0.11 0.63
                                      protocols.moves.ScoreMover: E(i) 113 -5.13 3.06 3.32 2.21 0.00 0.00 0.00 0.00 -0.66 0.00 0.00 0.00 0.00 0.00 -0.41 0.02 3.32 -0.41 -0.10
                                      protocols.moves.ScoreMover: E(i) 114 -4.08 1.79 3.13 0.89 2.31 -0.34 0.00 0.00 0.00 -0.06 0.00 0.00 0.00 0.00 -0.41 0.05 2.40 0.05 0.56
                                      protocols.moves.ScoreMover: E(i) 115 -4.30 5.97 3.04 0.77 2.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 5.13 -2.81 0.02
                                      protocols.moves.ScoreMover: E(i) 116 -2.97 5.88 2.66 2.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.19 0.00 -0.10
                                      protocols.moves.ScoreMover: total_energy fa_atr -605.070
                                      protocols.moves.ScoreMover: total_energy fa_rep 821.455
                                      protocols.moves.ScoreMover: total_energy fa_sol 385.544
                                      protocols.moves.ScoreMover: total_energy fa_intra_rep 531.407
                                      protocols.moves.ScoreMover: total_energy pro_close 17.217
                                      protocols.moves.ScoreMover: total_energy fa_pair -21.232
                                      protocols.moves.ScoreMover: total_energy hbond_sr_bb -63.928
                                      protocols.moves.ScoreMover: total_energy hbond_lr_bb -1.274
                                      protocols.moves.ScoreMover: total_energy hbond_bb_sc -6.158
                                      protocols.moves.ScoreMover: total_energy hbond_sc -1.953
                                      protocols.moves.ScoreMover: total_energy dslf_ss_dst 0.000
                                      protocols.moves.ScoreMover: total_energy dslf_cs_ang 0.000
                                      protocols.moves.ScoreMover: total_energy dslf_ss_dih 0.000
                                      protocols.moves.ScoreMover: total_energy dslf_ca_dih 0.000
                                      protocols.moves.ScoreMover: total_energy rama 127.207
                                      protocols.moves.ScoreMover: total_energy omega 10.675
                                      protocols.moves.ScoreMover: total_energy fa_dun 829.572
                                      protocols.moves.ScoreMover: total_energy p_aa_pp -30.636
                                      protocols.moves.ScoreMover: total_energy ref -30.360
                                      protocols.moves.ScoreMover: dslf_ca_dih dslf_cs_ang dslf_ss_dih dslf_ss_dst fa_atr fa_dun fa_intra_rep fa_pair fa_rep fa_sol hbond_bb_sc hbond_lr_bb hbond_sc hbond_sr_bb omega p_aa_pp pro_close rama ref total_score
                                      protocols.moves.ScoreMover: 0.000 0.000 0.000 0.000 -484.056 464.560 2.126 -10.404 361.440 250.604 -7.204 -1.490 -2.149 -37.398 5.337 -9.804 17.217 25.441 -30.360 543.861
                                      protocols.moves.ScoreMover:

                                      Scores Weight Raw Score Wghtd.Score

                                      fa_atr 0.800 -605.070 -484.056
                                      fa_rep 0.440 821.455 361.440
                                      fa_sol 0.650 385.544 250.604
                                      fa_intra_rep 0.004 531.407 2.126
                                      pro_close 1.000 17.217 17.217
                                      fa_pair 0.490 -21.232 -10.404
                                      hbond_sr_bb 0.585 -63.928 -37.398
                                      hbond_lr_bb 1.170 -1.274 -1.490
                                      hbond_bb_sc 1.170 -6.158 -7.204
                                      hbond_sc 1.100 -1.953 -2.149
                                      dslf_ss_dst 0.500 0.000 0.000
                                      dslf_cs_ang 2.000 0.000 0.000
                                      dslf_ss_dih 5.000 0.000 0.000
                                      dslf_ca_dih 5.000 0.000 0.000
                                      rama 0.200 127.207 25.441
                                      omega 0.500 10.675 5.337
                                      fa_dun 0.560 829.572 464.560
                                      p_aa_pp 0.320 -30.636 -9.804
                                      ref 1.000 -30.360 -30.360

                                      Total weighted score: 543.861

                                      End Scoring -score:patch score12 test
                                      End Scoring tests
                                      core.init: Mini-Rosetta version Exported from unknown
                                      core.init: command: ./protocols.test –database /rosetta/rosetta_database
                                      Test suite: RigidBodyMoverTests (test/protocols/moves/RigidBodyMover.cxxtest.hh)
                                      core.init: Mini-Rosetta version Exported from unknown
                                      core.init: command: ./protocols.test –database /rosetta/rosetta_database
                                      core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue CYS_p:CtermProteinFull 301
                                      core.conformation.Conformation: Found disulfide between residues 1 122
                                      core.conformation.Conformation: current variant for 1 CYS
                                      core.conformation.Conformation: current variant for 122 CYS
                                      core.conformation.Conformation: current variant for 1 CYD
                                      core.conformation.Conformation: current variant for 122 CYD
                                      core.conformation.Conformation: Found disulfide between residues 42 58
                                      core.conformation.Conformation: current variant for 42 CYS
                                      core.conformation.Conformation: current variant for 58 CYS
                                      core.conformation.Conformation: current variant for 42 CYD
                                      core.conformation.Conformation: current variant for 58 CYD
                                      core.conformation.Conformation: Found disulfide between residues 136 201
                                      core.conformation.Conformation: current variant for 136 CYS
                                      core.conformation.Conformation: current variant for 201 CYS
                                      core.conformation.Conformation: current variant for 136 CYD
                                      core.conformation.Conformation: current variant for 201 CYD
                                      core.conformation.Conformation: Found disulfide between residues 168 182
                                      core.conformation.Conformation: current variant for 168 CYS
                                      core.conformation.Conformation: current variant for 182 CYS
                                      core.conformation.Conformation: current variant for 168 CYD
                                      core.conformation.Conformation: current variant for 182 CYD
                                      core.conformation.Conformation: Found disulfide between residues 191 220
                                      core.conformation.Conformation: current variant for 191 CYS
                                      core.conformation.Conformation: current variant for 220 CYS
                                      core.conformation.Conformation: current variant for 191 CYD
                                      core.conformation.Conformation: current variant for 220 CYD
                                      core.conformation.Conformation: Found disulfide between residues 254 283
                                      core.conformation.Conformation: current variant for 254 CYS
                                      core.conformation.Conformation: current variant for 283 CYS
                                      core.conformation.Conformation: current variant for 254 CYD
                                      core.conformation.Conformation: current variant for 283 CYD
                                      core.conformation.Conformation: Found disulfide between residues 261 280
                                      core.conformation.Conformation: current variant for 261 CYS
                                      core.conformation.Conformation: current variant for 280 CYS
                                      core.conformation.Conformation: current variant for 261 CYD
                                      core.conformation.Conformation: current variant for 280 CYD
                                      core.conformation.Conformation: Found disulfide between residues 269 301
                                      core.conformation.Conformation: current variant for 269 CYS
                                      core.conformation.Conformation: current variant for 301 CYS
                                      core.conformation.Conformation: current variant for 269 CYD
                                      core.conformation.Conformation: current variant for 301 CYD
                                      core.pack.task: Packer task: initialize from command line()
                                      core.init: Mini-Rosetta version Exported from unknown
                                      core.init: command: ./protocols.test –database /rosetta/rosetta_database
                                      core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue CYS_p:CtermProteinFull 301
                                      core.conformation.Conformation: Found disulfide between residues 1 122
                                      core.conformation.Conformation: current variant for 1 CYS
                                      core.conformation.Conformation: current variant for 122 CYS
                                      core.conformation.Conformation: current variant for 1 CYD
                                      core.conformation.Conformation: current variant for 122 CYD
                                      core.conformation.Conformation: Found disulfide between residues 42 58
                                      core.conformation.Conformation: current variant for 42 CYS
                                      core.conformation.Conformation: current variant for 58 CYS
                                      core.conformation.Conformation: current variant for 42 CYD
                                      core.conformation.Conformation: current variant for 58 CYD
                                      core.conformation.Conformation: Found disulfide between residues 136 201
                                      core.conformation.Conformation: current variant for 136 CYS
                                      core.conformation.Conformation: current variant for 201 CYS
                                      core.conformation.Conformation: current variant for 136 CYD
                                      core.conformation.Conformation: current variant for 201 CYD
                                      core.conformation.Conformation: Found disulfide between residues 168 182
                                      core.conformation.Conformation: current variant for 168 CYS
                                      core.conformation.Conformation: current variant for 182 CYS
                                      core.conformation.Conformation: current variant for 168 CYD
                                      core.conformation.Conformation: current variant for 182 CYD
                                      core.conformation.Conformation: Found disulfide between residues 191 220
                                      core.conformation.Conformation: current variant for 191 CYS
                                      core.conformation.Conformation: current variant for 220 CYS
                                      core.conformation.Conformation: current variant for 191 CYD
                                      core.conformation.Conformation: current variant for 220 CYD
                                      core.conformation.Conformation: Found disulfide between residues 254 283
                                      core.conformation.Conformation: current variant for 254 CYS
                                      core.conformation.Conformation: current variant for 283 CYS
                                      core.conformation.Conformation: current variant for 254 CYD
                                      core.conformation.Conformation: current variant for 283 CYD
                                      core.conformation.Conformation: Found disulfide between residues 261 280
                                      core.conformation.Conformation: current variant for 261 CYS
                                      core.conformation.Conformation: current variant for 280 CYS
                                      core.conformation.Conformation: current variant for 261 CYD
                                      core.conformation.Conformation: current variant for 280 CYD
                                      core.conformation.Conformation: Found disulfide between residues 269 301
                                      core.conformation.Conformation: current variant for 269 CYS
                                      core.conformation.Conformation: current variant for 301 CYS
                                      core.conformation.Conformation: current variant for 269 CYD
                                      core.conformation.Conformation: current variant for 301 CYD
                                      core.pack.task: Packer task: initialize from command line()
                                      core.init: Mini-Rosetta version Exported from unknown
                                      core.init: command: ./protocols.test –database /rosetta/rosetta_database
                                      core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue CYS_p:CtermProteinFull 301
                                      core.conformation.Conformation: Found disulfide between residues 1 122
                                      core.conformation.Conformation: current variant for 1 CYS
                                      core.conformation.Conformation: current variant for 122 CYS
                                      core.conformation.Conformation: current variant for 1 CYD
                                      core.conformation.Conformation: current variant for 122 CYD
                                      core.conformation.Conformation: Found disulfide between residues 42 58
                                      core.conformation.Conformation: current variant for 42 CYS
                                      core.conformation.Conformation: current variant for 58 CYS
                                      core.conformation.Conformation: current variant for 42 CYD
                                      core.conformation.Conformation: current variant for 58 CYD
                                      core.conformation.Conformation: Found disulfide between residues 136 201
                                      core.conformation.Conformation: current variant for 136 CYS
                                      core.conformation.Conformation: current variant for 201 CYS
                                      core.conformation.Conformation: current variant for 136 CYD
                                      core.conformation.Conformation: current variant for 201 CYD
                                      core.conformation.Conformation: Found disulfide between residues 168 182
                                      core.conformation.Conformation: current variant for 168 CYS
                                      core.conformation.Conformation: current variant for 182 CYS
                                      core.conformation.Conformation: current variant for 168 CYD
                                      core.conformation.Conformation: current variant for 182 CYD
                                      core.conformation.Conformation: Found disulfide between residues 191 220
                                      core.conformation.Conformation: current variant for 191 CYS
                                      core.conformation.Conformation: current variant for 220 CYS
                                      core.conformation.Conformation: current variant for 191 CYD
                                      core.conformation.Conformation: current variant for 220 CYD
                                      core.conformation.Conformation: Found disulfide between residues 254 283
                                      core.conformation.Conformation: current variant for 254 CYS
                                      core.conformation.Conformation: current variant for 283 CYS
                                      core.conformation.Conformation: current variant for 254 CYD
                                      core.conformation.Conformation: current variant for 283 CYD
                                      core.conformation.Conformation: Found disulfide between residues 261 280
                                      core.conformation.Conformation: current variant for 261 CYS
                                      core.conformation.Conformation: current variant for 280 CYS
                                      core.conformation.Conformation: current variant for 261 CYD
                                      core.conformation.Conformation: current variant for 280 CYD
                                      core.conformation.Conformation: Found disulfide between residues 269 301
                                      core.conformation.Conformation: current variant for 269 CYS
                                      core.conformation.Conformation: current variant for 301 CYS
                                      core.conformation.Conformation: current variant for 269 CYD
                                      core.conformation.Conformation: current variant for 301 CYD
                                      core.pack.task: Packer task: initialize from command line()
                                      core.init: Mini-Rosetta version Exported from unknown
                                      core.init: command: ./protocols.test –database /rosetta/rosetta_database
                                      core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue CYS_p:CtermProteinFull 301
                                      core.conformation.Conformation: Found disulfide between residues 1 122
                                      core.conformation.Conformation: current variant for 1 CYS
                                      core.conformation.Conformation: current variant for 122 CYS
                                      core.conformation.Conformation: current variant for 1 CYD
                                      core.conformation.Conformation: current variant for 122 CYD
                                      core.conformation.Conformation: Found disulfide between residues 42 58
                                      core.conformation.Conformation: current variant for 42 CYS
                                      core.conformation.Conformation: current variant for 58 CYS
                                      core.conformation.Conformation: current variant for 42 CYD
                                      core.conformation.Conformation: current variant for 58 CYD
                                      core.conformation.Conformation: Found disulfide between residues 136 201
                                      core.conformation.Conformation: current variant for 136 CYS
                                      core.conformation.Conformation: current variant for 201 CYS
                                      core.conformation.Conformation: current variant for 136 CYD
                                      core.conformation.Conformation: current variant for 201 CYD
                                      core.conformation.Conformation: Found disulfide between residues 168 182
                                      core.conformation.Conformation: current variant for 168 CYS
                                      core.conformation.Conformation: current variant for 182 CYS
                                      core.conformation.Conformation: current variant for 168 CYD
                                      core.conformation.Conformation: current variant for 182 CYD
                                      core.conformation.Conformation: Found disulfide between residues 191 220
                                      core.conformation.Conformation: current variant for 191 CYS
                                      core.conformation.Conformation: current variant for 220 CYS
                                      core.conformation.Conformation: current variant for 191 CYD
                                      core.conformation.Conformation: current variant for 220 CYD
                                      core.conformation.Conformation: Found disulfide between residues 254 283
                                      core.conformation.Conformation: current variant for 254 CYS
                                      core.conformation.Conformation: current variant for 283 CYS
                                      core.conformation.Conformation: current variant for 254 CYD
                                      core.conformation.Conformation: current variant for 283 CYD
                                      core.conformation.Conformation: Found disulfide between residues 261 280
                                      core.conformation.Conformation: current variant for 261 CYS
                                      core.conformation.Conformation: current variant for 280 CYS
                                      core.conformation.Conformation: current variant for 261 CYD
                                      core.conformation.Conformation: current variant for 280 CYD
                                      core.conformation.Conformation: Found disulfide between residues 269 301
                                      core.conformation.Conformation: current variant for 269 CYS
                                      core.conformation.Conformation: current variant for 301 CYS
                                      core.conformation.Conformation: current variant for 269 CYD
                                      core.conformation.Conformation: current variant for 301 CYD
                                      core.pack.task: Packer task: initialize from command line()
                                      protocols.moves.RigidBodyMover: Randomize: Jump (before): RT -0.741525 0.289074 0.605456 -0.643594 -0.561425 -0.520182 0.189547 -0.775396 0.602357 -17.8087 -14.756 0.651526
                                      protocols.moves.RigidBodyMover: Randomize: Rot (before): 43.5465 33.1704 32.848
                                      protocols.geometry.RB_geometry: random_reorientation_matrix phi: 7.31801 psi: 22.3378 theta: 149.67
                                      protocols.moves.RigidBodyMover: Randomize: Jump (after): RT 0.344677 -0.744406 0.571889 0.93802 0.249584 -0.24047 0.0362735 0.619328 0.784294 -20.0674 -11.9204 4.27313
                                      protocols.moves.RigidBodyMover: Randomize: Rot (after): 43.5465 33.1704 32.848
                                      protocols.moves.RigidBodyMover: Randomize: —
                                      core.init: Mini-Rosetta version Exported from unknown
                                      core.init: command: ./protocols.test –database /rosetta/rosetta_database
                                      core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue CYS_p:CtermProteinFull 301
                                      core.conformation.Conformation: Found disulfide between residues 1 122
                                      core.conformation.Conformation: current variant for 1 CYS
                                      core.conformation.Conformation: current variant for 122 CYS
                                      core.conformation.Conformation: current variant for 1 CYD
                                      core.conformation.Conformation: current variant for 122 CYD
                                      core.conformation.Conformation: Found disulfide between residues 42 58
                                      core.conformation.Conformation: current variant for 42 CYS
                                      core.conformation.Conformation: current variant for 58 CYS
                                      core.conformation.Conformation: current variant for 42 CYD
                                      core.conformation.Conformation: current variant for 58 CYD
                                      core.conformation.Conformation: Found disulfide between residues 136 201
                                      core.conformation.Conformation: current variant for 136 CYS
                                      core.conformation.Conformation: current variant for 201 CYS
                                      core.conformation.Conformation: current variant for 136 CYD
                                      core.conformation.Conformation: current variant for 201 CYD
                                      core.conformation.Conformation: Found disulfide between residues 168 182
                                      core.conformation.Conformation: current variant for 168 CYS
                                      core.conformation.Conformation: current variant for 182 CYS
                                      core.conformation.Conformation: current variant for 168 CYD
                                      core.conformation.Conformation: current variant for 182 CYD
                                      core.conformation.Conformation: Found disulfide between residues 191 220
                                      core.conformation.Conformation: current variant for 191 CYS
                                      core.conformation.Conformation: current variant for 220 CYS
                                      core.conformation.Conformation: current variant for 191 CYD
                                      core.conformation.Conformation: current variant for 220 CYD
                                      core.conformation.Conformation: Found disulfide between residues 254 283
                                      core.conformation.Conformation: current variant for 254 CYS
                                      core.conformation.Conformation: current variant for 283 CYS
                                      core.conformation.Conformation: current variant for 254 CYD
                                      core.conformation.Conformation: current variant for 283 CYD
                                      core.conformation.Conformation: Found disulfide between residues 261 280
                                      core.conformation.Conformation: current variant for 261 CYS
                                      core.conformation.Conformation: current variant for 280 CYS
                                      core.conformation.Conformation: current variant for 261 CYD
                                      core.conformation.Conformation: current variant for 280 CYD
                                      core.conformation.Conformation: Found disulfide between residues 269 301
                                      core.conformation.Conformation: current variant for 269 CYS
                                      core.conformation.Conformation: current variant for 301 CYS
                                      core.conformation.Conformation: current variant for 269 CYD
                                      core.conformation.Conformation: current variant for 301 CYD
                                      core.pack.task: Packer task: initialize from command line()
                                      protocols.moves.RigidBodyMover: Spin: Jump (before): RT -0.741525 0.289074 0.605456 -0.643594 -0.561425 -0.520182 0.189547 -0.775396 0.602357 -17.8087 -14.756 0.651526
                                      protocols.moves.RigidBodyMover: Spin: Rot (before: 43.5465 33.1704 32.848
                                      protocols.moves.RigidBodyMover: Spin: Jump (after): RT -0.834199 0.421317 -0.355815 -0.502856 -0.316281 0.804427 0.22638 0.849976 0.475703 -18.0229 -13.3583 4.77134
                                      protocols.moves.RigidBodyMover: Spin: Rot (after): 43.5465 33.1704 32.848
                                      protocols.moves.RigidBodyMover: Spin: —
                                      core.init: Mini-Rosetta version 已导出 from unknown
                                      core.init: command: ./protocols.test –database /rosetta/rosetta_database
                                      core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue CYS_p:CtermProteinFull 301
                                      core.conformation.Conformation: Found disulfide between residues 1 122
                                      core.conformation.Conformation: current variant for 1 CYS
                                      core.conformation.Conformation: current variant for 122 CYS
                                      core.conformation.Conformation: current variant for 1 CYD
                                      core.conformation.Conformation: current variant for 122 CYD
                                      core.conformation.Conformation: Found disulfide between residues 42 58
                                      core.conformation.Conformation: current variant for 42 CYS
                                      core.conformation.Conformation: current variant for 58 CYS
                                      core.conformation.Conformation: current variant for 42 CYD
                                      core.conformation.Conformation: current variant for 58 CYD
                                      core.conformation.Conformation: Found disulfide between residues 136 201
                                      core.conformation.Conformation: current variant for 136 CYS
                                      core.conformation.Conformation: current variant for 201 CYS
                                      core.conformation.Conformation: current variant for 136 CYD
                                      core.conformation.Conformation: current variant for 201 CYD
                                      core.conformation.Conformation: Found disulfide between residues 168 182
                                      core.conformation.Conformation: current variant for 168 CYS
                                      core.conformation.Conformation: current variant for 182 CYS
                                      core.conformation.Conformation: current variant for 168 CYD
                                      core.conformation.Conformation: current variant for 182 CYD
                                      core.conformation.Conformation: Found disulfide between residues 191 220
                                      core.conformation.Conformation: current variant for 191 CYS
                                      core.conformation.Conformation: current variant for 220 CYS
                                      core.conformation.Conformation: current variant for 191 CYD
                                      core.conformation.Conformation: current variant for 220 CYD
                                      core.conformation.Conformation: Found disulfide between residues 254 283
                                      core.conformation.Conformation: current variant for 254 CYS
                                      core.conformation.Conformation: current variant for 283 CYS
                                      core.conformation.Conformation: current variant for 254 CYD
                                      core.conformation.Conformation: current variant for 283 CYD
                                      core.conformation.Conformation: Found disulfide between residues 261 280
                                      core.conformation.Conformation: current variant for 261 CYS
                                      core.conformation.Conformation: current variant for 280 CYS
                                      core.conformation.Conformation: current variant for 261 CYD
                                      core.conformation.Conformation: current variant for 280 CYD
                                      core.conformation.Conformation: Found disulfide between residues 269 301
                                      core.conformation.Conformation: current variant for 269 CYS
                                      core.conformation.Conformation: current variant for 301 CYS
                                      core.conformation.Conformation: current variant for 269 CYD
                                      core.conformation.Conformation: current variant for 301 CYD
                                      core.pack.task: Packer task: initialize from command line()
                                      protocols.moves.RigidBodyMover: Translate: Jump (before): RT -0.741525 0.289074 0.605456 -0.643594 -0.561425 -0.520182 0.189547 -0.775396 0.602357 -17.8087 -14.756 0.651526
                                      protocols.moves.RigidBodyMover: Translate: Jump (after): RT -0.741525 0.289074 0.605456 -0.643594 -0.561425 -0.520182 0.189547 -0.775396 0.602357 -18.6155 -15.327 0.803288
                                      Test suite: MoversTest (test/protocols/moves/MoversTest.cxxtest.hh)
                                      core.init: Mini-Rosetta version Exported from unknown
                                      core.init: command: ./protocols.test –database /rosetta/rosetta_database -no_optH
                                      Testing: SmallMover…
                                      core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue LEU_p:CtermProteinFull 116
                                      core.pack.task: Packer task: initialize from command line()
                                      End SmallMover test
                                      Testing: ShearMover…
                                      core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue LEU_p:CtermProteinFull 116
                                      core.pack.task: Packer task: initialize from command line()
                                      End ShearMover test
                                      Test suite: ContainerMoversTest (test/protocols/moves/MoverContainer.cxxtest.hh)
                                      core.init: Mini-Rosetta version Exported from unknown
                                      core.init: command: ./protocols.test –database /rosetta/rosetta_database
                                      core.init: Mini-Rosetta version Exported from unknown
                                      core.init: command: ./protocols.test –database /rosetta/rosetta_database
                                      core.init: Mini-Rosetta version Exported from unknown
                                      core.init: command: ./protocols.test –database /rosetta/rosetta_database
                                      Test suite: BackrubMoverTest (test/protocols/moves/BackrubMover.cxxtest.hh)
                                      core.init: Mini-Rosetta version Exported from unknown
                                      core.init: command: ./protocols.test –database /rosetta/rosetta_database
                                      core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue LEU_p:CtermProteinFull 116
                                      core.pack.task: Packer task: initialize from command line()
                                      protocols.moves.BackrubMover.cxxtest: Attempting 3 residue segment
                                      protocols.moves.BackrubMover.cxxtest: Attempting 3 residue segment (reversed)
                                      protocols.moves.BackrubMover.cxxtest: Attempting 2 residue segment
                                      protocols.moves.BackrubMover.cxxtest: Attempting 3 atom segment
                                      protocols.moves.BackrubMover.cxxtest: Attempting 3 residue segment (duplicate)
                                      protocols.moves.BackrubMover: Warning: Backrub segment atomno= 2 rsd= 2 to atomno= 2 rsd= 4 already exists, ignoring
                                      protocols.moves.BackrubMover.cxxtest: Attempting 3 residue segment (invalid)
                                      protocols.moves.BackrubMover: Warning: Backrub segment atomno= 7 rsd= 1 to atomno= 2 rsd= 3 invalid, ignoring
                                      protocols.moves.BackrubMover.cxxtest: Attempting 2 atom segment (short)
                                      protocols.moves.BackrubMover: Warning: Backrub segment atomno= 2 rsd= 1 to atomno= 3 rsd= 1 too short, ignoring
                                      protocols.moves.BackrubMover.cxxtest: Attempting 2 atom segment (short, reversed)
                                      protocols.moves.BackrubMover: Warning: Backrub segment atomno= 3 rsd= 1 to atomno= 2 rsd= 1 too short, ignoring
                                      protocols.moves.BackrubMover.cxxtest: Attempting 1 atom segment (ultra short)
                                      protocols.moves.BackrubMover: Warning: Backrub segment atomno= 3 rsd= 1 to atomno= 3 rsd= 1 too short, ignoring
                                      protocols.moves.BackrubMover.cxxtest: Attempting 2 residue segment (N atoms)
                                      protocols.moves.BackrubMover: Warning: Backrub segment atomno= 1 rsd= 1 to atomno= 1 rsd= 2 invalid, ignoring
                                      protocols.moves.BackrubMover.cxxtest: Rotating segment 1
                                      protocols.moves.BackrubMover.cxxtest: Rotating lysine side chain segment
                                      core.io.database: Database file opened: /rosetta/rosetta_database/branch_angle/branch_angle_1.txt
                                      core.io.database: Database file opened: /rosetta/rosetta_database/branch_angle/branch_angle_2.txt
                                      Test suite: TorsionSamplingKinematicPerturberTests (test/protocols/moves/kinematic_closure/TorsionSamplingKinematicPerturber.cxxtest.hh)
                                      core.init: Mini-Rosetta version Exported from unknown
                                      core.init: command: ./protocols.test –database /rosetta/rosetta_database
                                      core.pack.task: Packer task: initialize from command line()
                                      All tests passed!
                                      Unable to read yaml file with test results build/test/release/linux/2.6/64/x86/gcc//devel.test.yaml – unit test run aborted!

                                    • May 3, 2011 at 2:01 pm #5531
                                      Anonymous

                                        Hi smlewis,
                                        I have done according to your suggestions,it showed me that follow,it’s ok now?
                                        [root@localhost rosetta_source]# test/run.py -d /rosetta/rosetta_database -j8 –mode=release –mute all
                                        Identifying platform…

                                        Platform found: release/linux/2.6/64/x86/gcc/
                                        Paths: cd build/test/release/linux/2.6/64/x86/gcc/ && command line: ./protocols.test –database /rosetta/rosetta_database -mute all
                                        Paths: cd build/test/release/linux/2.6/64/x86/gcc/ && command line: ./core.test –database /rosetta/rosetta_database -mute all
                                        Paths: cd build/test/release/linux/2.6/64/x86/gcc/ && command line: ./ObjexxFCL.test –database /rosetta/rosetta_database -mute all
                                        Paths: cd build/test/release/linux/2.6/64/x86/gcc/ && command line: ./numeric.test –database /rosetta/rosetta_database -mute all
                                        Paths: cd build/test/release/linux/2.6/64/x86/gcc/ && command line: ./utility.test –database /rosetta/rosetta_database -mute all
                                        Paths: cd build/test/release/linux/2.6/64/x86/gcc/ && command line: ./apps.test –database /rosetta/rosetta_database -mute all
                                        Running 0 tests
                                        All tests passed!
                                        Running 82 tests
                                        Test suite: HistogramTests (test/numeric/interpolation/Histogram.cxxtest.hh)
                                        Test suite: FFTTests (test/numeric/fourier/fft.cxxtest.hh)
                                        Test suite: Cubic_spline_tests (test/numeric/interpolation/spline/Cubic_spline.cxxtest.hh)
                                        Test suite: Bicubic_spline_tests (test/numeric/interpolation/spline/Bicubic_spline.cxxtest.hh)
                                        Test suite: WeightedSamplerTests (test/numeric/random/WeightedSampler.cxxtest.hh)
                                        Test suite: ReservoirSamplingTests (test/numeric/random/reservoir_sample.cxxtest.hh)
                                        Test suite: BoundingBoxTests (test/numeric/geometry/BoundingBox.cxxtest.hh)
                                        Test suite: KDTreeTests (test/numeric/kdtree/kdtree.cxxtest.hh)
                                        Test suite: agglomerative_hierarchical_clusteringTest (test/numeric/agglomerative_hierarchical_clustering.cxxtest.hh)
                                        Test suite: ClusteringTreeNodeTest (test/numeric/ClusteringTreeNode.cxxtest.hh)

                                        Test suite: XYZVectorTests (test/numeric/xyzVector.cxxtest.hh)
                                        Test suite: XYZTripleTests (test/numeric/xyzTriple.cxxtest.hh)
                                        Test suite: XYZMatrixTests (test/numeric/xyzMatrix.cxxtest.hh)
                                        Test suite: XYZFunctionsTests (test/numeric/xyz.functions.cxxtest.hh)
                                        Test suite: RandomSystemTests (test/numeric/random.cxxtest.hh)
                                        Test suite: QuaternionTests (test/numeric/Quaternion.cxxtest.hh)
                                        Test suite: StatisticsFunctionsTests (test/numeric/statistics.functions.cxxtest.hh)
                                        Test suite: NumericFunctionsTests (test/numeric/numeric.functions.cxxtest.hh)
                                        Test suite: MultiDimensionalHistogramTests (test/numeric/MultiDimensionalHistogram.cxxtest.hh)
                                        Test suite: HomogenousTransformTests (test/numeric/HomogeneousTransform.cxxtest.hh)
                                        Test suite: ConversionsTests (test/numeric/conversions.cxxtest.hh)
                                        Test suite: NumericUtilTests (test/numeric/util.cxxtest.hh)
                                        All tests passed!
                                        Running 1 test
                                        Test suite: LigandDockTest (test/apps/public/ligand_docking/ligand_dock.cxxtest.hh)
                                        All tests passed!
                                        Running 113 tests
                                        Test suite: OwningPtrMITests (test/utility/pointer/owning_ptr_MI.cxxtest.hh)
                                        Test suite: OwningPtrTests (test/utility/pointer/owning_ptr.cxxtest.hh)
                                        Test suite: AccessPtrTests (test/utility/pointer/access_ptr.cxxtest.hh)
                                        Test suite: ZipStreamTests (test/utility/io/zipstream.cxxtest.hh)

                                        Test Line 1
                                        Test Line 2
                                        Test suite: IZStreamTests (test/utility/io/izstream.cxxtest.hh)
                                        Test suite: TokenHubTests (test/utility/signals/TokenHub.cxxtest.hh)
                                        Test suite: SignalHubTests (test/utility/signals/SignalHub.cxxtest.hh)
                                        Test suite: PausableSignalHubTests (test/utility/signals/PausableSignalHub.cxxtest.hh)
                                        Test suite: BufferedSignalHubTests (test/utility/signals/BufferedSignalHub.cxxtest.hh)
                                        Test suite: FactoryTests (test/utility/factory/Factory.cxxtest.hh)
                                        Test suite: UserKeyTests (test/utility/keys/UserKey.cxxtest.hh)
                                        Test suite: SmallKeyVectorTests (test/utility/keys/SmallKeyVector.cxxtest.hh)
                                        Test suite: SmallKeyMapTests (test/utility/keys/SmallKeyMap.cxxtest.hh)
                                        Test suite: Key4VectorTests (test/utility/keys/Key4Vector.cxxtest.hh)
                                        Test suite: Key4TupleTests (test/utility/keys/Key4Tuple.cxxtest.hh)
                                        Test suite: KeyVectorTests (test/utility/keys/ClassKeyVector.cxxtest.hh)
                                        Test suite: KeyMapTests (test/utility/keys/ClassKeyMap.cxxtest.hh)
                                        Test suite: AutoKeyTests (test/utility/keys/AutoKey.cxxtest.hh)
                                        Test suite: PathNameTests (test/utility/file/PathName.cxxtest.hh)
                                        Test suite: FileSysUtilTests (test/utility/file/file_sys_util.cxxtest.hh)
                                        Test suite: Sqlite3ConnectionManagerTests (test/utility/sql_database/Sqlite3ConnectionManager.cxxtest.hh)
                                        Test suite: StringUtilTests (test/utility/string_util.cxxtest.hh)
                                        Test suite: VectorLTests (test/utility/vectorL.cxxtest.hh)
                                        Test suite: Vector1BoolTests (test/utility/vector1_bool.cxxtest.hh)
                                        Test suite: Vector1_Tests (test/utility/vector1.cxxtest.hh)
                                        Test suite: Vector0Tests (test/utility/vector0.cxxtest.hh)
                                        Test suite: UToolsTests (test/utility/UTools.cxxtest.hh)
                                        Test suite: OrderedTupleTests (test/utility/OrderedTuple.cxxtest.hh)
                                        Test suite: LexicographicalIteratorTests (test/utility/LexicographicalIterator.cxxtest.hh)
                                        Test suite: integer_mappingTests (test/utility/integer_mapping.cxxtest.hh)
                                        Test suite: in_place_listTests (test/utility/in_place_list.cxxtest.hh)
                                        Test suite: heapTests (test/utility/heap.cxxtest.hh)
                                        Test suite: BitVectorTests (test/utility/BitVector.cxxtest.hh)
                                        Test suite: BitSetTests (test/utility/BitSet.cxxtest.hh)
                                        All tests passed!
                                        Running 311 tests
                                        Test suite: rtmin_setup_Tests (test/core/pack/scmin/rtmin_setup.cxxtest.hh)
                                        Test suite: SCMinMultifuncTests (test/core/pack/scmin/SCMinMultifunc.cxxtest.hh)
                                        Test suite: SCMinMinimizerMapTests (test/core/pack/scmin/SCMinMinimizerMap.cxxtest.hh)
                                        Test suite: AtomTreeCollectionTests (test/core/pack/scmin/AtomTreeCollection.cxxtest.hh)
                                        Test suite: RotamerSubsetsTest (test/core/pack/rotamer_set/RotamerSubsets.cxxtest.hh)
                                        Test suite: RotamerSetsTests (test/core/pack/rotamer_set/RotamerSet.cxxtest.hh)
                                        Test suite: TaskOperationsTests (test/core/pack/task/operation/TaskOperations.cxxtest.hh)
                                        Test suite: Resfile_Silent (test/core/pack/task/Resfile_Silent.cxxtest.hh)
                                        Test suite: FixHisTautomerTest (test/core/pack/task/fix_his_tautomer.cxxtest.hh)
                                        Test suite: ResfileReaderTests (test/core/pack/task/ResfileReader.cxxtest.hh)
                                        Test suite: SymmetricRotamerTrials (test/core/pack/SymmetricRotamerTrials.cxxtest.hh)
                                        Test suite: RotamerTrials (test/core/pack/RotamerTrials.cxxtest.hh)
                                        Test suite: min_pack_Tests (test/core/pack/min_pack.cxxtest.hh)
                                        Test suite: InteractionGraphFactoryTests (test/core/pack/interaction_graph/InteractionGraphFactory.cxxtest.hh)
                                        ~DoubleLazyIG: used 0 bytes instead of 0
                                        ~DoubleLazyIG: used 0 bytes instead of 0
                                        Test suite: RotamerDotsTests (test/core/pack/interaction_graph/RotamerDots.cxxtest.hh)
                                        Test suite: HPatchInteractionGraphTests (test/core/pack/interaction_graph/HPatchInteractionGraph.cxxtest.hh)
                                        Test suite: SurfaceInteractionGraphTests (test/core/pack/interaction_graph/SurfaceInteractionGraph.cxxtest.hh)
                                        Test suite: FASTERInteractionGraphTests (test/core/pack/interaction_graph/FASTERInteractionGraph.cxxtest.hh)
                                        Test suite: FASTERAnnealerTests (test/core/pack/annealer/FASTERAnnealer.cxxtest.hh)
                                        Test suite: DunbrackTest (test/core/scoring/dunbrack/Dunbrack.cxxtest.hh)

                                        In DunbrackTest::test_dunbrack_best_rotamer_energy:
                                        ./test/core/scoring/dunbrack/Dunbrack.cxxtest.hh:219: Error: Assertion failed: best_rotamerE <= this_rotamerE
                                        ./test/core/scoring/dunbrack/Dunbrack.cxxtest.hh:219: Error: Assertion failed: best_rotamerE <= this_rotamerE
                                        ./test/core/scoring/dunbrack/Dunbrack.cxxtest.hh:219: Error: Assertion failed: best_rotamerE <= this_rotamerE
                                        CXXTEST_ERROR: test_dunbrack_best_rotamer_energy Failed!
                                        Test suite: FullatomCustomPairDistanceEnergyTests (test/core/scoring/custom_pair_distance/FullatomCustomPairDistanceEnergy.cxxtest.hh)
                                        Test suite: ParticleSwarmMinimizerTests (test/core/optimization/ParticleSwarmMinimizer.cxxtest.hh)
                                        Test suite: MinimizerTests (test/core/optimization/Minimizer.cxxtest.hh)
                                        Test suite: CarbonHBondEnergyTests (test/core/scoring/carbon_hbonds/CarbonHBondEnergy.cxxtest.hh)
                                        Test suite: HackElecEnergyTests (test/core/scoring/hackelec/HackElecEnergy.cxxtest.hh)
                                        Test suite: MMTorsionScoreTests (test/core/mm/MMTorsionScore.cxxtest.hh)
                                        Test suite: MMTorsionLibraryTests (test/core/mm/MMTorsionLibrary.cxxtest.hh)
                                        Test suite: MMBondAngleScoreTests (test/core/mm/MMBondAngleScore.cxxtest.hh)
                                        Test suite: MMBondAngleLibraryTests (test/core/mm/MMBondAngleLibrary.cxxtest.hh)
                                        Test suite: GeometricSolEnergyTests (test/core/scoring/geometric_solvation/GeometricSolEnergy.cxxtest.hh)
                                        Test suite: SplineFuncTests (test/core/scoring/constraints/SplineFunc.cxxtest.hh)
                                        Test suite: ConstraintUtilTests (test/core/scoring/constraints/util.cxxtest.hh)
                                        Test suite: GaussianFuncTests (test/core/scoring/constraints/GaussianFunc.cxxtest.hh)
                                        Test suite: HarmonicFuncTests (test/core/scoring/constraints/HarmonicFunc.cxxtest.hh)
                                        Test suite: DihedralConstraintTests (test/core/scoring/constraints/DihedralConstraint.cxxtest.hh)
                                        Test suite: ConstraintsEnergyTests (test/core/scoring/constraints/ConstraintsEnergy.cxxtest.hh)
                                        Test suite: ConstraintSetRemappingTests (test/core/scoring/constraints/ConstraintSetRemapping.cxxtest.hh)
                                        Test suite: BigBinConstraintTests (test/core/scoring/constraints/BigBinConstraint.cxxtest.hh)
                                        Test suite: AtomPairConstraintTests (test/core/scoring/constraints/AtomPairConstraint.cxxtest.hh)
                                        Test suite: AngleConstraintTests (test/core/scoring/constraints/AngleConstraint.cxxtest.hh)
                                        Test suite: CartGridTest (test/core/grid/CartGrid.cxxtest.hh)
                                        Test suite: MetricValueIOTest (test/core/util/MetricValueIO.cxxtest.hh)
                                        Test suite: InterfaceTest (test/core/conformation/Interface.cxxtest.hh)
                                        Test suite: ConformationTests (test/core/conformation/Conformation.cxxtest.hh)
                                        Test suite: ConformationAtomTest (test/core/conformation/Atom.cxxtest.hh)
                                        Test suite: PoseUtilTests (test/core/pose/util.cxxtest.hh)
                                        Test suite: PoseTests (test/core/pose/Pose.cxxtest.hh)
                                        Test suite: PDBPoseMapTests (test/core/pose/PDBPoseMap.cxxtest.hh)
                                        Test suite: PDBInfoTests (test/core/pose/PDBInfo.cxxtest.hh)
                                        Test suite: OrderedFragSetTest (test/core/fragment/OrderedFragSet.cxxtest.hh)
                                        Test suite: IndependentBBTorsionSRFDTests (test/core/fragment/IndependentBBTorsionSRFD.cxxtest.hh)
                                        Test suite: FragmentConstantLengthTest (test/core/fragment/ConstantLengthFragments.cxxtest.hh)
                                        Test suite: EtableEnergyTests (test/core/scoring/etable/EtableEnergy.cxxtest.hh)
                                        Test suite: Symmetric_Binary_Protein_Silent_File_Tests (test/core/io/silent/symmetric_binary_protein_silent.cxxtest.hh)
                                        Test suite: Binary_Protein_Silent_File_Tests (test/core/io/silent/binary_protein_silent.cxxtest.hh)
                                        Test suite: PDBSilentStruct_Tests (test/core/io/silent/pdb_silent.cxxtest.hh)
                                        Test suite: ProteinSilentStructTests (test/core/io/silent/protein_silent.cxxtest.hh)
                                        Test suite: FoldTreeTest (test/core/kinematics/FoldTree.cxxtest.hh)
                                        Test suite: FragmentCandidatesTests (test/core/fragment/picking/FragmentCandidatesTests.cxxtest.hh)
                                        Test suite: TorsionBinIOTests (test/core/fragment/picking/TorsionBinIO.cxxtest.hh)
                                        Test suite: AutomorphismTest (test/core/chemical/automorphism.cxxtest.hh)
                                        Test suite: MMAtomTypeSetTests (test/core/chemical/MMAtomTypeSet.cxxtest.hh)
                                        Test suite: AtomTypeSetTests (test/core/chemical/AtomTypeSet.cxxtest.hh)
                                        Test suite: SymmetricConformationTests (test/core/conformation/symmetry/SymmetricConformation.cxxtest.hh)
                                        Test suite: ArrayPoolTests (test/core/graph/ArrayPool.cxxtest.hh)
                                        Test suite: GraphTests (test/core/graph/Graph.cxxtest.hh)
                                        Test suite: DisjointSetsTests (test/core/graph/DisjointSets.cxxtest.hh)
                                        Test suite: AtomTreeDiffTests (test/core/io/atom_tree_diffs/atom_tree_diff.cxxtest.hh)
                                        Test suite: VirtualResidueScoreTest (test/core/scoring/VirtualResidues.cxxtest.hh)
                                        Test suite: UnfoldedStatePotentialTests (test/core/scoring/UnfoldedStatePotential.cxxtest.hh)
                                        Test suite: SurfacePotentialTests (test/core/scoring/SurfacePotential.cxxtest.hh)
                                        Test suite: ScoreTest (test/core/scoring/ScoreTest.cxxtest.hh)
                                        Test suite: SasaTests (test/core/scoring/sasa.cxxtest.hh)
                                        Test suite: RmsUtilTest (test/core/scoring/rms_util.cxxtest.hh)
                                        Test suite: EnvPairPotentialTest (test/core/scoring/EnvPairPotential.cxxtest.hh)
                                        Test suite: EnergyMapTest (test/core/scoring/EnergyMap.cxxtest.hh)
                                        Test suite: SymmetricMinimizerTests (test/core/optimization/symmetry/SymmetricMinimizer.cxxtest.hh)
                                        Test suite: FullatomDisulfideEnergyTests (test/core/scoring/disulfides/FullatomDisulfideEnergy.cxxtest.hh)
                                        Test suite: PDB_IO (test/core/io/PDB_IO.cxxtest.hh)
                                        Test suite: UnfoldedStateEnergyTests (test/core/scoring/methods/UnfoldedStateEnergy.cxxtest.hh)
                                        Test suite: RG_Energy_Tests (test/core/scoring/methods/RG_Energy.cxxtest.hh)
                                        Test suite: RamachandranEnergyTests (test/core/scoring/methods/RamachandranEnergy.cxxtest.hh)
                                        Test suite: ProClosureEnergyTests (test/core/scoring/methods/ProClosureEnergy.cxxtest.hh)
                                        Test suite: P_AA_EnergyTests (test/core/scoring/methods/P_AA_Energy.cxxtest.hh)
                                        Test suite: P_AA_pp_EnergyTests (test/core/scoring/methods/P_AA_pp_Energy.cxxtest.hh)
                                        Test suite: PairEnergyTests (test/core/scoring/methods/PairEnergy.cxxtest.hh)
                                        Test suite: MMTorsionEnergyTests (test/core/scoring/methods/MMTorsionEnergy.cxxtest.hh)
                                        Test suite: MMBondAngleEnergyTests (test/core/scoring/methods/MMBondAngleEnergy.cxxtest.hh)
                                        Test suite: LinearChainbreakEnergyTests (test/core/scoring/methods/LinearChainbreakEnergy.cxxtest.hh)
                                        Test suite: ContactOrderEnergy_Tests (test/core/scoring/methods/ContactOrderEnergy.cxxtest.hh)
                                        Test suite: ChainbreakEnergyTests (test/core/scoring/methods/ChainbreakEnergy.cxxtest.hh)
                                        Test suite: HBondDerivTest (test/core/scoring/hbonds/HBondDerivTest.cxxtest.hh)
                                        Test suite: HBondFadeIntervalTest (test/core/scoring/hbonds/HBondFadeIntervalTest.cxxtest.hh)
                                        Test suite: HBondDatabaseTest (test/core/scoring/hbonds/HBondDatabaseTest.cxxtest.hh)
                                        Test suite: HBPolyTest (test/core/scoring/hbonds/polynomial.cxxtest.hh)
                                        Test suite: HBondsTest (test/core/scoring/hbonds/HBonds.cxxtest.hh)
                                        Test suite: HBondEnergyTests (test/core/scoring/hbonds/HBondEnergy.cxxtest.hh)
                                        Test suite: SymmetricScoreTest (test/core/scoring/symmetry/SymmetricScoreTest.cxxtest.hh)
                                        Testing score: fa_atr…
                                        Testing score: fa_rep…
                                        Testing score: fa_sol…
                                        Testing score: fa_intra_atr…
                                        Testing score: fa_intra_rep…
                                        Testing score: fa_intra_sol…
                                        Testing score: mm_twist…
                                        Testing score: hack_elec…
                                        Testing score: atom_pair_constraint…
                                        Testing score: coordinate_constraint…
                                        Testing score: hbond_sr_bb…
                                        Comparing the symmetrical score: -88.8243 to the assymetric: -88.8406 difference: 0.0162786
                                        Test suite: SequenceUtilTests (test/core/sequence/SequenceUtil.cxxtest.hh)
                                        Test suite: SequenceAlignmentTests (test/core/sequence/SequenceAlignment.cxxtest.hh)
                                        Test suite: SequenceMappingTests (test/core/sequence/SequenceMapping.cxxtest.hh)
                                        Test suite: ScoringSchemeTests (test/core/sequence/ScoringSchemes.cxxtest.hh)
                                        Test suite: VallTests (test/core/fragment/picking/vall/vall.cxxtest.hh)

                                        Failed 1 of 311 tests
                                        Success rate: 99%
                                        Running 204 tests
                                        Test suite: EntityTests (test/protocols/genetic_algorithm/Entity.cxxtest.hh)
                                        Test suite: RotamerRecoveryTests (test/protocols/rotamer_recovery/RotamerRecovery.cxxtest.hh)
                                        Test suite: RRReporterTests (test/protocols/rotamer_recovery/RRReporter.cxxtest.hh)
                                        Test suite: RRComparerTests (test/protocols/rotamer_recovery/RRComparer.cxxtest.hh)
                                        Test suite: BranchAngleOptimizerTest (test/protocols/branch_angle/BranchAngleOptimizer.cxxtest.hh)
                                        Test suite: WobbleMoverTest (test/protocols/abinitio/WobbleMover.cxxtest.hh)
                                        Test suite: PseudocontactShiftTests (test/protocols/abinitio/PseudocontactShiftEnergy.cxxtest.hh)
                                        Test suite: GunnCostTest (test/protocols/abinitio/GunnCost.cxxtest.hh)
                                        Test suite: FragmentMoverTest (test/protocols/abinitio/FragmentMover.cxxtest.hh)
                                        Test suite: ThreadingMover_Tests (test/protocols/comparative_modeling/ThreadingMover.cxxtest.hh)
                                        Test suite: AlignmentStream_Tests (test/protocols/comparative_modeling/AlignmentStream.cxxtest.hh)
                                        Test suite: CM_Util_Tests (test/protocols/comparative_modeling/util.cxxtest.hh)
                                        Test suite: PlainSilentFileJobDistributorTest (test/protocols/jobdist/PlainSilentFileJobDistributor.cxxtest.hh)
                                        jobdist curr_nstruct: 8 actual curr_nstruct: 8
                                        jobdist curr_nstruct: 9 actual curr_nstruct: 9
                                        Test suite: VoxelSetIteratorTests (test/protocols/match/VoxelSetIterator.cxxtest.hh)
                                        Test suite: RigidLigandBuilderTests (test/protocols/match/RigidLigandBuilder.cxxtest.hh)
                                        Test suite: ScaffoldBuildPointTests (test/protocols/match/ScaffoldBuildPoint.cxxtest.hh)
                                        Test suite: ProteinUpstreamBuilderTests (test/protocols/match/ProteinUpstreamBuilder.cxxtest.hh)
                                        Test suite: ProteinSCSamplerTests (test/protocols/match/ProteinSCSampler.cxxtest.hh)
                                        Test suite: OccupiedSpaceHashTests (test/protocols/match/OccupiedSpaceHash.cxxtest.hh)
                                        Test suite: LigandConformerTests (test/protocols/match/LigandConformer.cxxtest.hh)
                                        Test suite: HasherTests (test/protocols/match/Hasher.cxxtest.hh)
                                        Test suite: ExternalGeomSamplerTests (test/protocols/match/ExternalGeomSampler.cxxtest.hh)
                                        Test suite: BumpGridTests (test/protocols/match/BumpGrid.cxxtest.hh)
                                        Test suite: ResidueTorsionRestraintsTest (test/protocols/ligand_docking/ResidueTorsionRestraints.cxxtest.hh)
                                        Test suite: SegmentSwapTests (test/protocols/forge/build/SegmentSwap.cxxtest.hh)
                                        Test suite: SegmentRebuildTests (test/protocols/forge/build/SegmentRebuild.cxxtest.hh)
                                        new cuts made: 8
                                        FOLD_TREE EDGE 1 4 -1 EDGE 4 8 -1 JEDGE 4 19 1 N C END EDGE 19 20 -1 EDGE 19 9 -1

                                        new cuts made: 6
                                        FOLD_TREE EDGE 1 4 -1 EDGE 4 6 -1 JEDGE 4 12 1 N C END EDGE 12 13 -1 EDGE 12 7 -1

                                        new cuts made: 8
                                        FOLD_TREE EDGE 1 5 -1 EDGE 5 8 -1 JEDGE 5 15 1 N C END EDGE 15 27 -1 EDGE 15 9 -1

                                        new cuts made: 8
                                        FOLD_TREE EDGE 1 4 -1 EDGE 4 8 -1 JEDGE 4 19 1 N C END EDGE 19 20 -1 EDGE 19 9 -1

                                        new cuts made: 6
                                        FOLD_TREE EDGE 1 4 -1 EDGE 4 6 -1 JEDGE 4 12 1 N C END EDGE 12 13 -1 EDGE 12 7 -1

                                        new cuts made: 11
                                        FOLD_TREE EDGE 1 7 -1 EDGE 7 11 -1 JEDGE 7 21 1 CA CA END EDGE 21 12 -1 EDGE 21 27 -1

                                        new cuts made: 6
                                        FOLD_TREE EDGE 1 2 -1 EDGE 2 6 -1 JEDGE 2 19 1 N C END EDGE 19 20 -1 EDGE 19 7 -1

                                        new cuts made: 5
                                        FOLD_TREE EDGE 1 2 -1 EDGE 2 5 -1 JEDGE 2 13 1 N C END EDGE 13 14 -1 EDGE 13 6 -1

                                        new cuts made: 7
                                        FOLD_TREE EDGE 1 2 -1 EDGE 2 7 -1 JEDGE 2 23 1 N C END EDGE 23 24 -1 EDGE 23 8 -1

                                        FOLD_TREE EDGE 11 6 -1 EDGE 6 12 1 EDGE 12 22 -1 EDGE 6 1 -1

                                        FOLD_TREE EDGE 1 7 -1 JEDGE 1 8 1 CA C END EDGE 8 18 -1

                                        FOLD_TREE EDGE 1 9 -1 JEDGE 1 12 1 CA C END EDGE 12 17 -1 EDGE 12 10 -1

                                        FOLD_TREE EDGE 1 9 -1 EDGE 1 10 1 EDGE 10 20 -1

                                        Test suite: SegmentInsertTests (test/protocols/forge/build/SegmentInsert.cxxtest.hh)
                                        Test suite: RelativeConnectRightTests (test/protocols/forge/build/RelativeConnectRight.cxxtest.hh)
                                        Test suite: GrowRightTests (test/protocols/forge/build/GrowRight.cxxtest.hh)
                                        Test suite: GrowLeftTests (test/protocols/forge/build/GrowLeft.cxxtest.hh)
                                        Test suite: ConnectRightTests (test/protocols/forge/build/ConnectRight.cxxtest.hh)
                                        Test suite: BuildManagerTests (test/protocols/forge/build/BuildManager.cxxtest.hh)
                                        new cuts made: 5
                                        FOLD_TREE EDGE 1 4 -1 EDGE 4 5 -1 JEDGE 4 8 1 N C END EDGE 8 18 -1 EDGE 8 6 -1

                                        new cuts made: 15
                                        FOLD_TREE EDGE 3 6 -1 EDGE 6 7 -1 JEDGE 6 10 1 N C END EDGE 10 8 -1 EDGE 3 1 -1 EDGE 10 11 -1 EDGE 11 15 -1 JEDGE 11 19 2 N C END EDGE 19 22 -1 EDGE 19 16 -1

                                        Test suite: BridgeTests (test/protocols/forge/build/Bridge.cxxtest.hh)
                                        Test suite: DDGBindOptEDataTests (test/protocols/optimize_weights/DDGBindOptEData.cxxtest.hh)
                                        Test suite: ArithmeticTests (test/protocols/optimize_weights/Arithmetic.cxxtest.hh)
                                        Test suite: APClusterTest (test/protocols/cluster/APCluster.cxxtest.hh)
                                        Test suite: cout_io (test/protocols/util/cout.cxxtest.hh)
                                        Test suite: Neighbor_CalculatorsTests (test/protocols/toolbox/PoseMetricCalculators/Neighbor_Calculators.cxxtest.hh)
                                        Test suite: DsspTests (test/protocols/jumping/Dssp.cxxtest.hh)
                                        Test suite: JumpingTest (test/protocols/jumping/JumpSetup.cxxtest.hh)
                                        Test suite: MatchConstraintFileInfoTest (test/protocols/enzdes/MatchConstraintFileInfo.cxxtest.hh)
                                        Test suite: PredockRotCenterTest (test/protocols/enzdes/PredockRotCenter.cxxtest.hh)
                                        Test suite: HBondCalculatorsTest (test/protocols/enzdes/HBondCalculatorsTest.cxxtest.hh)
                                        Test suite: LigInterfaceConstraintsTest (test/protocols/enzdes/LigInterfaceConstraints.cxxtest.hh)
                                        Test suite: fold_tree_functions_Tests (test/protocols/forge/methods/fold_tree_functions.cxxtest.hh)
                                        Test suite: ProteinInterfaceDesignOperationTests (test/protocols/toolbox/TaskOperations/ProteinInterfaceDesignOperation.cxxtest.hh)
                                        Test suite: RestrictNonSurfaceToRepackingOperationTests (test/protocols/toolbox/TaskOperations/RestrictNonSurfaceToRepackingOperation.cxxtest.hh)
                                        Test suite: RestrictOperationsTests (test/protocols/toolbox/TaskOperations/RestrictOperations.cxxtest.hh)
                                        Test suite: DockingTest (test/protocols/docking/DockingTest.cxxtest.hh)
                                        Test suite: TaskAwareMinMoverTests (test/protocols/moves/TaskAwareMinMover.cxxtest.hh)
                                        Test suite: TypesetMoversTests (test/protocols/moves/TypesetMovers.cxxtest.hh)
                                        Test suite: ShearMoverTest (test/protocols/moves/ShearMover.cxxtest.hh)
                                        Test suite: SmallMoverTest (test/protocols/moves/SmallMover.cxxtest.hh)
                                        Test suite: ScoreTest (test/protocols/moves/ScoreTest.cxxtest.hh)
                                        Start All Scoring tests
                                        Testing: ScoreMover…
                                        End Scoring -score:patch score12 test
                                        End Scoring tests
                                        Test suite: RigidBodyMoverTests (test/protocols/moves/RigidBodyMover.cxxtest.hh)
                                        Test suite: MoversTest (test/protocols/moves/MoversTest.cxxtest.hh)
                                        Testing: SmallMover…
                                        End SmallMover test
                                        Testing: ShearMover…
                                        End ShearMover test
                                        Test suite: ContainerMoversTest (test/protocols/moves/MoverContainer.cxxtest.hh)
                                        Test suite: BackrubMoverTest (test/protocols/moves/BackrubMover.cxxtest.hh)
                                        Test suite: TorsionSamplingKinematicPerturberTests (test/protocols/moves/kinematic_closure/TorsionSamplingKinematicPerturber.cxxtest.hh)
                                        All tests passed!

                                        Unit test summary

                                        Total number of tests: 711
                                        number tests passed: 710
                                        number tests failed: 1
                                        failed tests:
                                        core.test: test_dunbrack_best_rotamer_energy
                                        Success rate: 99%

                                        End of Unit test summary
                                        Done!

                                      • May 3, 2011 at 2:38 pm #5533
                                        Anonymous

                                          I used the database in rosetta3.2.1_bundles.tgz

                                        • May 3, 2011 at 2:51 pm #5534
                                          Anonymous

                                            As I thought it might, this does not duplicate on my machine.

                                            If you look into the code, the comparison that is failing is tested twice, once to low precision and once to high precision. Only the high-precision test is failing. This makes me suspect that it is a numerical noise error that is not exposed on any of the architectures we normally test on (and therefore not a problem). I think you’re okay to ignore it; if you want to try to dig into the C++ we can.

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