unknown constraint function type: AtomPair ?

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    • July 15, 2012 at 9:13 am #1346
      Anonymous

        Hi, when I tried to use constraints files with loopmodel, rosetta give the error message:

        ERROR: FuncFactory: unknown constraint function type: AtomPair
        ERROR:: Exit from: src/core/scoring/constraints/FuncFactory.cc line: 65

        Could you help me to find out what’s the problem?
        Thank you very much!

      • July 15, 2012 at 1:59 pm #7407
        Anonymous

          Can you attach or paste in your constraints file?

        • July 15, 2012 at 4:18 pm #7409
          Anonymous

            If you look through the whole file, there are places like this:

            AtomPair CA 57 CA 111 HARMONIC 29.319525 2.421549
            AtomPair CA 56 CA 56

            The error is because this line: “AtomPair CA 56 CA 56 ” has no function (HARMONIC), so it interprets the next line as the function, which crashes – AtomPair is being misinterpreted as a function, which it can’t do, so it crashes.

            There are some short lines like that; I also spotted lines like this:

            AtomPair CA 58 CA 59 HARMONIC 17.356678 nan

            nan is going to cause the constraint file to crash too. Fix the broken lines and it should work.

          • July 15, 2012 at 3:04 pm #7408
            Anonymous

              Yes, sure. Sorry for didn’t provide it.

              AtomPair CA 57 CA 58 HARMONIC 3.752875 3.650887
              AtomPair CA 57 CA 59 HARMONIC 6.262022 3.347396
              AtomPair CA 57 CA 61 HARMONIC 11.879360 3.063429
              AtomPair CA 57 CA 62 HARMONIC 14.494870 3.063960
              AtomPair CA 57 CA 63 HARMONIC 13.904751 2.761792
              AtomPair CA 57 CA 64 HARMONIC 13.954515 2.624959
              AtomPair CA 57 CA 65 HARMONIC 17.019257 2.736512
              AtomPair CA 57 CA 66 HARMONIC 18.845855 2.495250
              AtomPair CA 57 CA 67 HARMONIC 18.349315 2.166099
              AtomPair CA 57 CA 68 HARMONIC 19.280260 2.294511
              AtomPair CA 57 CA 69 HARMONIC 22.118809 2.410393
              AtomPair CA 57 CA 70 HARMONIC 23.333585 2.128003
              AtomPair CA 57 CA 71 HARMONIC 23.446567 2.100799
              AtomPair CA 57 CA 72 HARMONIC 25.278195 2.450539
              AtomPair CA 57 CA 73 HARMONIC 28.952924 2.566187
              AtomPair CA 57 CA 74 HARMONIC 31.417886 2.787531
              AtomPair CA 57 CA 75 HARMONIC 33.767416 2.996959
              AtomPair CA 57 CA 76 HARMONIC 34.303884 3.153460
              AtomPair CA 57 CA 77 HARMONIC 35.975251 3.135354
              AtomPair CA 57 CA 78 HARMONIC 33.125253 2.726439
              AtomPair CA 57 CA 79 HARMONIC 31.041119 2.695878
              AtomPair CA 57 CA 80 HARMONIC 31.695831 2.729547
              AtomPair CA 57 CA 81 HARMONIC 30.731902 2.374613
              AtomPair CA 57 CA 82 HARMONIC 27.728058 2.188563
              AtomPair CA 57 CA 83 HARMONIC 26.837915 2.389821
              AtomPair CA 57 CA 84 HARMONIC 26.629772 2.242611
              AtomPair CA 57 CA 85 HARMONIC 24.518367 1.967889
              AtomPair CA 57 CA 86 HARMONIC 22.109963 2.170478
              AtomPair CA 57 CA 87 HARMONIC 22.051495 2.380557
              AtomPair CA 57 CA 88 HARMONIC 21.460366 2.211299
              AtomPair CA 57 CA 89 HARMONIC 18.543548 2.221317
              AtomPair CA 57 CA 90 HARMONIC 16.918457 2.610738
              AtomPair CA 57 CA 91 HARMONIC 18.657572 2.728527
              AtomPair CA 57 CA 92 HARMONIC 17.829889 2.661332
              AtomPair CA 57 CA 93 HARMONIC 15.091604 2.961306
              AtomPair CA 57 CA 94 HARMONIC 13.442966 2.984628
              AtomPair CA 57 CA 95 HARMONIC 12.374223 3.038812
              AtomPair CA 57 CA 96 HARMONIC 13.708245 3.245203
              AtomPair CA 57 CA 97 HARMONIC 15.375032 3.544083
              AtomPair CA 57 CA 98 HARMONIC 17.405628 3.459622
              AtomPair CA 57 CA 99 HARMONIC 18.958380 3.166336

            • July 17, 2012 at 5:22 pm #7416
              Anonymous

                Thank you very much!

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