I am using RosettaCM to build a hexon in the virus capsid. The tutorial provides membrane and non-membrane weights in the “Hybridize” step. Should I use the membrane or the non-membrane weights? Are the membrane weights applicable for any membranes?
https://www.rosettacommons.org/demos/latest/tutorials/rosetta_cm/rosetta_cm_tutorial
Here is to show the stage1 weights for membrane and non-membrane
stage1.wts
env 1.0
pair 1.0
cbeta 1.0
cenpack 1.0
hs_pair 2.0
ss_pair 2.0
rsigma 2.0
sheet 2.0
vdw 0.2
rg 2.0
rama 0.3
linear_chainbreak 2.0
atom_pair_constraint 1.0
stage1_membrane.wts
# stage1 weights for hybridization: membrane score weights added
Menv 2.019
Mpair 1.0
Mcbeta 2.5
cenpack 1.0
hs_pair 1.0
ss_pair 1.0
rsigma 1.0
sheet 1.0
vdw 3.0
rg .1
rama 0.15
linear_chainbreak 2.0
atom_pair_constraint 1.0
Menv_non_helix 2.019
Menv_termini 2.019
Menv_tm_proj 2.019
Mlipo 1.0
STRAND_STRAND_WEIGHTS 0 6
.
