Warning: Fold tree is not set properly for density scoring

[Anonymous]

I am trying to build glycans into a cryoEM density following the Meiler Lab tutorial here: http://www.meilerlab.org/jobs/downloadfile/name/Apr2019_glycan_modeling_talk.pdf

 

Using the provided XML file, I am able to run the job, but I see the following warning throughout the output file:

0mcore.scoring.electron_density.FastDensEnergy: ^[[0m^[[1m[ WARNING ]^[[0m Fold tree is not set properly for density scoring!

 

What does this warning mean? Will this have an impact on the results?

[Anonymous]

Hello,

In order to use electron density the SetupForDensityScoring mover must be run first  (ie the Add block must come first) and the “-mapfile {mymafile.mrc} ” flags must be given.

 

That warning means that currently you are not using electron density in the simulations.

.....

<SetupForDensityScoring name="setupdens"  />

....



<Add mover="setupdens"/>

....

[Author]

Posts