Member Site › Forums › Rosetta 3 › Rosetta 3 – General › how to keep modeling ignored ERROR?
- This topic has 3 replies, 2 voices, and was last updated 11 years, 3 months ago by
Anonymous.
-
AuthorPosts
-
-
April 27, 2013 at 12:44 pm #1567
Anonymous
Hi, I was doing ab initio with homology.pdb.
During modeling, there is a small problem but, I want to ignore small error and keep modeling.
>>
Scores Weight Raw Score Wghtd.Score
coordinate_constraint 0.010 549399852.990 5493998.530
Total weighted score: 5493998.500protocols.idealize.IdealizeMover: (1) RMS between original pose and idealised pose: 72.2241 CA RMSD, 72.8871 All-Atom RMSD,
protocols.general_abinitio: (1) AbrelaxMover: switch to fullatomERROR: Could not find disulfide partner for residue 107
ERROR:: Exit from: src/core/scoring/disulfides/FullatomDisulfideEnergyContainer.cc line: 576
<< But, I can get S_*.pdb model until stop modeling loops_closed_postprocessedS_0001.pdb S_0003.pdb stage1_cyclesS_0006.pdb stage3S_0001.pdb
loops_closed_postprocessedS_0002.pdb score.sc stage1S_0001.pdb stage3S_0002.pdb
loops_closed_postprocessedS_0003.pdb stage0S_0001.pdb stage1S_0002.pdb stage3S_0003.pdb
loops_closed_postprocessedS_0004.pdb stage0S_0002.pdb stage1S_0003.pdb stage3S_0004.pdb
loops_closed_postprocessedS_0005.pdb stage0S_0003.pdb stage1S_0004.pdb stage3S_0005.pdb
loops_closedS_0001.pdb stage0S_0004.pdb stage1S_0005.pdb stage3S_0006.pdb
loops_closedS_0002.pdb stage0S_0005.pdb stage1S_0006.pdb stage4S_0001.pdb
loops_closedS_0003.pdb stage0S_0006.pdb stage2S_0001.pdb stage4S_0002.pdb
loops_closedS_0004.pdb stage1_cyclesS_0001.pdb stage2S_0002.pdb stage4S_0003.pdb
loops_closedS_0005.pdb stage1_cyclesS_0002.pdb stage2S_0003.pdb stage4S_0004.pdb
README.txt stage1_cyclesS_0003.pdb stage2S_0004.pdb stage4S_0005.pdb
S_0001.pdb stage1_cyclesS_0004.pdb stage2S_0005.pdb
S_0002.pdb stage1_cyclesS_0005.pdb stage2S_0006.pdbwhat should I do? (I don’t want to change 107 disulfide partner.)
-
April 29, 2013 at 1:46 am #8688
Anonymous
Try the two options mentioned here:
https://www.rosettacommons.org/content/abinitiorelax-disulfide-bonds-are-not-being-retained
-
April 29, 2013 at 1:52 am #8689
Anonymous
I would try them together first, and see if that gets rid of the error.
-
May 16, 2013 at 6:06 am #8765
Anonymous
Thank you for your exprain.
I’ve solved problems.
Thank you.
-
-
AuthorPosts
- You must be logged in to reply to this topic.