how to keep modeling ignored ERROR?

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  • This topic has 3 replies, 2 voices, and was last updated 11 years ago by Anonymous.
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    • #1567
      Anonymous

        Hi, I was doing ab initio with homology.pdb.

        During modeling, there is a small problem but, I want to ignore small error and keep modeling.

        >>
        Scores Weight Raw Score Wghtd.Score


        coordinate_constraint 0.010 549399852.990 5493998.530


        Total weighted score: 5493998.500

        protocols.idealize.IdealizeMover: (1) RMS between original pose and idealised pose: 72.2241 CA RMSD, 72.8871 All-Atom RMSD,
        protocols.general_abinitio: (1) AbrelaxMover: switch to fullatom

        ERROR: Could not find disulfide partner for residue 107
        ERROR:: Exit from: src/core/scoring/disulfides/FullatomDisulfideEnergyContainer.cc line: 576
        << But, I can get S_*.pdb model until stop modeling loops_closed_postprocessedS_0001.pdb S_0003.pdb stage1_cyclesS_0006.pdb stage3S_0001.pdb
        loops_closed_postprocessedS_0002.pdb score.sc stage1S_0001.pdb stage3S_0002.pdb
        loops_closed_postprocessedS_0003.pdb stage0S_0001.pdb stage1S_0002.pdb stage3S_0003.pdb
        loops_closed_postprocessedS_0004.pdb stage0S_0002.pdb stage1S_0003.pdb stage3S_0004.pdb
        loops_closed_postprocessedS_0005.pdb stage0S_0003.pdb stage1S_0004.pdb stage3S_0005.pdb
        loops_closedS_0001.pdb stage0S_0004.pdb stage1S_0005.pdb stage3S_0006.pdb
        loops_closedS_0002.pdb stage0S_0005.pdb stage1S_0006.pdb stage4S_0001.pdb
        loops_closedS_0003.pdb stage0S_0006.pdb stage2S_0001.pdb stage4S_0002.pdb
        loops_closedS_0004.pdb stage1_cyclesS_0001.pdb stage2S_0002.pdb stage4S_0003.pdb
        loops_closedS_0005.pdb stage1_cyclesS_0002.pdb stage2S_0003.pdb stage4S_0004.pdb
        README.txt stage1_cyclesS_0003.pdb stage2S_0004.pdb stage4S_0005.pdb
        S_0001.pdb stage1_cyclesS_0004.pdb stage2S_0005.pdb
        S_0002.pdb stage1_cyclesS_0005.pdb stage2S_0006.pdb

        what should I do? (I don’t want to change 107 disulfide partner.)

      • #8688
        Anonymous
        • #8689
          Anonymous

            I would try them together first, and see if that gets rid of the error.

          • #8765
            Anonymous

              Thank you for your exprain.

              I’ve solved problems.

              Thank you.

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