- This topic has 3 replies, 2 voices, and was last updated 10 years, 6 months ago by Anonymous.
April 27, 2013 at 12:44 pm #1567Anonymous
Hi, I was doing ab initio with homology.pdb.
During modeling, there is a small problem but, I want to ignore small error and keep modeling.
Scores Weight Raw Score Wghtd.Score
coordinate_constraint 0.010 549399852.990 5493998.530
Total weighted score: 5493998.500
protocols.idealize.IdealizeMover: (1) RMS between original pose and idealised pose: 72.2241 CA RMSD, 72.8871 All-Atom RMSD,
protocols.general_abinitio: (1) AbrelaxMover: switch to fullatom
ERROR: Could not find disulfide partner for residue 107
ERROR:: Exit from: src/core/scoring/disulfides/FullatomDisulfideEnergyContainer.cc line: 576
<< But, I can get S_*.pdb model until stop modeling loops_closed_postprocessedS_0001.pdb S_0003.pdb stage1_cyclesS_0006.pdb stage3S_0001.pdb
loops_closed_postprocessedS_0002.pdb score.sc stage1S_0001.pdb stage3S_0002.pdb
loops_closed_postprocessedS_0003.pdb stage0S_0001.pdb stage1S_0002.pdb stage3S_0003.pdb
loops_closed_postprocessedS_0004.pdb stage0S_0002.pdb stage1S_0003.pdb stage3S_0004.pdb
loops_closed_postprocessedS_0005.pdb stage0S_0003.pdb stage1S_0004.pdb stage3S_0005.pdb
loops_closedS_0001.pdb stage0S_0004.pdb stage1S_0005.pdb stage3S_0006.pdb
loops_closedS_0002.pdb stage0S_0005.pdb stage1S_0006.pdb stage4S_0001.pdb
loops_closedS_0003.pdb stage0S_0006.pdb stage2S_0001.pdb stage4S_0002.pdb
loops_closedS_0004.pdb stage1_cyclesS_0001.pdb stage2S_0002.pdb stage4S_0003.pdb
loops_closedS_0005.pdb stage1_cyclesS_0002.pdb stage2S_0003.pdb stage4S_0004.pdb
README.txt stage1_cyclesS_0003.pdb stage2S_0004.pdb stage4S_0005.pdb
S_0001.pdb stage1_cyclesS_0004.pdb stage2S_0005.pdb
S_0002.pdb stage1_cyclesS_0005.pdb stage2S_0006.pdb
what should I do? (I don’t want to change 107 disulfide partner.)
April 29, 2013 at 1:46 am #8688Anonymous
Try the two options mentioned here:
April 29, 2013 at 1:52 am #8689Anonymous
I would try them together first, and see if that gets rid of the error.
May 16, 2013 at 6:06 am #8765Anonymous
Thank you for your exprain.
I’ve solved problems.
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