loop modeling error ‘CcdLoopClosureMover’ object is not callable

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    • October 22, 2013 at 8:49 am #1735
      Anonymous

        I am using the current release “PyRosetta v2.012” it stucked, error is given bellow
        the “loops.py” script which i m using have been attached with this post this script is provided online its not my own script: thanks

        from where i can get the reference for all the available methods and function of Pyrosetta so that i can use that as per my requirement and it seems that scripts are written for different versions may not work for all the versions so how can i get the version specific details of various pyrosetta functions

        Error Log++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++Error Log
        core.chemical.ResidueTypeSet: Finished initializing centroid residue type set.
        Created 1980 residue types
        set up job distributor
        randomizing loop
        low res loop modeling
        Traceback (most recent call last):
        File “loops.py”, line 89, in
        ccd(p)
        TypeError: ‘CcdLoopClosureMover’ object is not callable
        C:UsersZebrafishDesktopLOOPmodeingloop_modelingloop_modeling>python loops.

      • October 22, 2013 at 9:27 pm #9441
        Anonymous

          http://www.pyrosetta.org/tutorials

          This is just general, most commands should work with your 2.012 version.

        • October 23, 2013 at 6:39 am #9442
          Anonymous

            Hi thanks for your reply.
            i m very new user of rosetta and pyrosetta i have idea about the algorithms of various molecular simulation programs like Gromacs autodock and other.

            i want to know is there any documentation available about all the algorithms and methods used in Rosetta ? more precisely rather then hard core scientific notation i am looking for an easy and more descriptive documentation which can provide the information of various methods available in Rosetta.

            Actually i found one very impressive feature of Rosetta and PyRosetta, with the help of various methods i can write my own algorithm to solve a biological problem but it should required a detailed knowledge of various libraries, objects and methods.

            thanks

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