Question about run FLEXPEPDOCK with 3 chain

This topic has 3 replies, 2 voices, and was last updated 10 years, 6 months ago by Anonymous.

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- July 2, 2014 at 3:46 pm #1940
  Anonymous
  hello everyone,
  
  I run FLexpepdock with receptor have 2 chain (1 long chain and 1 short chain) and 1 peptide.
  I set 2 chain of receptor same chain name (chain A) and peptide (chain .
  This is right or wrong.
  
  thank you so much
- July 2, 2014 at 8:35 pm #10144
  Anonymous
  Hi Phanvy,
  I assume you use Rosetta 3.4, from our correspondence. Next release will include multichain receptor support. Meanwhile, what you are doing is OK and should work. If you are having a trouble with it, please post a log file of the run and the pdb.
- July 3, 2014 at 12:44 am #10146
  Anonymous
  Dear Orielg,
  Thank you so much for your reply
  I use Rosetta 3.4 and I can run with them.
  
  thank you
- July 3, 2014 at 6:32 am #10147
  Anonymous
  Dear Orielg,
  If I use the different chain name for each chains of receptor, what will happen? I mean, what is the different between set same chain names and different chain names of receptor?
  can you explain more to me?
  
  Thank you so much
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