Question about run FLEXPEPDOCK with 3 chain

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  • This topic has 3 replies, 2 voices, and was last updated 10 years ago by Anonymous.
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    • July 2, 2014 at 3:46 pm #1940
      Anonymous

        hello everyone,

        I run FLexpepdock with receptor have 2 chain (1 long chain and 1 short chain) and 1 peptide.
        I set 2 chain of receptor same chain name (chain A) and peptide (chain B).
        This is right or wrong.

        thank you so much

      • July 2, 2014 at 8:35 pm #10144
        Anonymous

          Hi Phanvy,
          I assume you use Rosetta 3.4, from our correspondence. Next release will include multichain receptor support. Meanwhile, what you are doing is OK and should work. If you are having a trouble with it, please post a log file of the run and the pdb.

        • July 3, 2014 at 12:44 am #10146
          Anonymous

            Dear Orielg,
            Thank you so much for your reply
            I use Rosetta 3.4 and I can run with them.

            thank you

          • July 3, 2014 at 6:32 am #10147
            Anonymous

              Dear Orielg,
              If I use the different chain name for each chains of receptor, what will happen? I mean, what is the different between set same chain names and different chain names of receptor?
              can you explain more to me?

              Thank you so much

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