PyRosetta4 installation problem

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    • June 28, 2018 at 11:57 pm #2946
      Anonymous

        Hi:

        I am trying to install Pyrosetta4 with the following system and software settings:

        Ubuntu Linux 16.04 LTS 64Bit

        Python 2.7.12 (ubuntu default), 64bit

        PyRosetta4.Release.python27.ubuntu.release-184

        I followed the instructions given on RyRosetta website and typed in the command “cd setup && sudo python setup.py install” in terminal.

        An error message quicked showed up as:

        Downloading https://pypi.io/packages/source/s/setuptools/setuptools-3.3.zip

        Extracting in /tmp/tmp7GOXbq

        Now working in /tmp/tmp7GOXbq/setuptools-3.3

        Building a Setuptools egg in /home/zuodong/Program/PyRosetta4/PyRosetta4.Release.python27.ubuntu.release-184/setup

        /home/zuodong/Program/PyRosetta4/PyRosetta4.Release.python27.ubuntu.release-184/setup/setuptools-3.3-py2.7.egg

        Traceback (most recent call last):

          File “setup.py”, line 77, in <module>

            setup_package()

          File “setup.py”, line 61, in setup_package

            version = get_package_version(),

          File “setup.py”, line 36, in get_package_version

            subprocess.check_output([“git”, “rev-parse”, “–show-toplevel”]).strip().decode(),

          File “/usr/lib/python2.7/subprocess.py”, line 567, in check_output

            process = Popen(stdout=PIPE, *popenargs, **kwargs)

          File “/usr/lib/python2.7/subprocess.py”, line 711, in __init__

            errread, errwrite)

          File “/usr/lib/python2.7/subprocess.py”, line 1343, in _execute_child

            raise child_exception

        OSError: [Errno 2] No such file or directory

        Could anyone give me some suggestions on how to fix the problem? Thank you very much!

        zsun12

      • July 4, 2018 at 7:40 am #14327
        Anonymous

          Hi

          don’t know if you succeed or not but I had similar issue it  has been fixe following this:

          Install basic development packages

          This list may not be sufficient and necessary for building Python for PyRosetta. Maybe someone can correct me here:

          sudo apt-get install build-essential libbz2-dev libncursesw5-dev libreadline-gplv2-dev libssl-dev libgdbm-dev libc6-dev libsqlite3-dev tk-dev mysql-client libmysqlclient-dev

          If this command fails, remove the failed package(s) from the apt-get command line and try again. Take note of those that failed though in case they are needed. You may need libreadline5-dev instead of libreadline-gplv2-dev.

           

          This is taken from

          https://www.rosettacommons.org/content/trouble-building-pyrosetta-linux-mint-13-maya-64-bit

           

          Cheers

          JM

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