error running rosetta3.1 demos

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    • October 22, 2010 at 3:43 am #673
      Anonymous

        Hello, I compiled Rosetta3.1 on Ubuntu 8.2, the complie is fine no error report. Then I run some example under rosetta_demons/ directory according to the readme file in the directory, and I have errors:

        for rosetta_demos/Ligand_Docking, the error is :

        ERROR: Unable to open file: ./silent.out

        ERROR:: Exit from: src/protocols/jobdist/JobDistributors.hh line: 825

         

        for rosetta_demos/Docking, the error is:

        ERROR: Option matching -dock_mcm not found in command line top-level context

         

        I donot know what is the problem, did I miss something when I install Rosetta3.1?  I am new user of Rosetta, any one tell me what should I do to get rid of these errors?

         

         

         

      • October 22, 2010 at 2:46 pm #4623
        Anonymous

          “ERROR: Unable to open file: ./silent.out”

           

          I would guess you are running the test in a directory for which you do not have write permission.  Rosetta is saying it can’t write to that file; probably you don’t have write access to the directory you’re running in.

           

           

           

          “ERROR: Option matching -dock_mcm not found in command line top-level context”

          The documentation is out of date.  I believe dock_mcm is the default, so you no longer need to specify it.  If you’ll examine rosetta_source/test/integration/tests/docking instead, you’ll see that the option is commented out in the flags file for that test.

        • October 23, 2010 at 1:48 am #4624
          Anonymous

            Thanks, problem solved.

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