Reply To: how do I repeat relax runs and get scoring functions at every state

Member Site › Forums › Rosetta++ › Rosetta++ – General › how do I repeat relax runs and get scoring functions at every state › Reply To: how do I repeat relax runs and get scoring functions at every state

December 10, 2008 at 8:30 pm #4035
bpierce
Participant

    > 1) To compare two different minimization algorithms, I run “-relax -cenrlx -ex1 -ex2”, which, I believe, contains randomness in perturbation. How do I make each relax run the same?

    BTW, the ex flags apply only to full atom, not to centroid modes, so I don’t think they are doing anything for you in your command line. (They refer to chi 1 and chi 2 angles of side chains).